Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0168 ATGGAAGAAGTAGTATTATTGGTTGATGATTTGAAATTACTTTCCGGGATTTCTCGCTGTAGAATATGCCATGAAGAAGAATTTGAGAGTTCCGAAAGCTTCGAAGCTCCTTGTGCTTGTTCTGGTACCGTTAAGTTTGCTCATAGAGATTGCATACAGAGATGGTGCAATGAGAAAGGAAACACAACCTGTGAAATATGTCTCAAGGAATATGAACCTGGATATACAGCACCCTCAAAGAAATCTCTGATAAATGACGAGGCTTTGACAATCAGAGATAGCCTGCAAATTCCAAGGGATGAGGAACCGTTAAGCGCAAGATCAGAGGGTAGTGACGACGAAGGAATCACAACAGAAGGAGATTACTCTGAGTGCACGTCTACTGCTGATAGAAGTGCATCTTGCTGCAGATCACTGGCTTTAACTTTTACACTCATGCTGCTTGTGAGACATCTTTTCGTAGTGCTTACAAATACGGAGGAAGATTACCCATTTTCACTTTTGACGGTGTTTATACTAAAAGCAAGCGGGATCATTCTACCTATGTACATAATCATGTGGGCGATTGGCGGCATATATGGCAATATTCGACGTCACTACCAGGATTCTGACGACGACATATCAATATCCGACAGTGAAGATGAAGACAGTGAGCTGATGCACGATACCATTGCTCTTGTTGCCATGATAGTTGTCTTATCATTGACGCCGTGCTGGTATGTTATGATCAAACGCGTTGAGCAGCGCGTTAATTCAAACTCACAGAATTTTCTCTTGGAGTTACAAGATGAAATTGATCACTCTGCCAAACTATTACCCCCCATGAAGTCAACATCAGCCAATTTGGCACGAATTCTAAGTTCAACATTCAATAAGACAACTAATATCTCATTCTCTGACATTGAGACCAAAGTGGCTCCATTGTTGTTTCATGCATTCGAGATGATTCCTCAGTTGTCCGAAATCTCATACATTGGGACGGATGGTCTATTTTTCTCATACTACACAGAACATAATCAAAATCTTGCAATGTACTCTAACTCCTCCTTTTCCTCAGAAATCATTTACTATGTTCAACCTGTAAATCTTGACACTGGAGGATTATATGGTGAAGCCGTAATATATAAGCACCCTGTTGATACAACTTGGACCAAGGAAGCAATCAAGAGTTCCAACGGATACGCCTCATTGGGATACAAGTGGAGTGACAATCATGAGATTTTATACCTTAACTTGGTTAGAATCTCAAGAACTGGAGTTATCTCAGTAGGACTTCCAGCAAAGATAATCGCAGACTTTGTCGCTCCCACTAGGCGTCAAGGTGCAAGCTTGTATCTGGCTTCCAAAGATGGCAAAGTGCTTCAAAAAGGAATCCAAAATGCCCATATAGAATTCTATGATGATACGGCTTCCTTCTATTCAGTGAAACCAAATGGTGAGCTATTGAGTTATCAGGGCACCCTCTCATGTAAGGCTGAAGCCATTGCTTCTGTTCTGAAAATTGGGGGCACTCGCTATTTGACTCGCTGCTCATCAATTGATATAATGGGAGTAGAATTGGTGTACGTCTTGGCTATCCCCCAAAATGGATTGGTGACTTTTGTACATGAGAGTAGGAAAAGGGGATTGGTGTTAATGAGCACAATGATAGTGATGATATTGGTCTCTATCTTTAGTTTTCTTTGGTTAAATGCTATAATGGGTTGGCGAGAGATGCATTTGTGCGTGTCTCTTATCAAACAAATGGAAGACACTCGGCAAGCGGAGAGGAAGAGTATGAACAAGAGCCTAGCATTTGCAAGTGCTAGCCATAATATTCGTGCTTTTCTTGCTGGCCTGACTGGTTTGATAGAGATGTCCGACGAAGAAGCTATCCCTGGTTCAGAACTAGAGGCCAATTTAAAAAAAATGAGTGCTTGCACAGAAAACTTACTAGGGCTATTGAATTCTATTCTTGATACAAGTAAAGTTGAGGCAGGCAAAATGCAGCTTGATGAAGAGGAATTTGATCTATCCCAGGTCATAGAAGAAGCAATTGATTGGTACTATACTGCGGCTATGAAAAAAGGGGTCGATCTTGTCTTGGACCATTGTAATGGTTCGGTTATCAGATATTCGCATGTCAAAGGTGACAAAGGAAAGCTGAAACAAGTTTTGTACAATTTAGTAAGCAATTCTGTTAAATTTACGAATGAGGGACATATAGCAGTTCGAGCTTGGGCTCAAACGCCAAGTTTCCATAACTCAATAATGGCTTCTAAAAGATACAATTTTATCAAGCATTTGACATGCTTATTTTACAAGAAAAATGAATCAGATGTACAAGTAGAAGTAAGAGATGCAATCCAACAAGATCCAAACTTGTTGCAGTTTGTGTTTGAAGTAGATGATACTGGAAAAGGGATTCCCAAAGAGAAGCATAATTCAGTGTTTGATAATTATGTTCAAGTCAAAGAAAATGCTTCAGGAGTCACTGGTTTGGGACTTGGCATTGTGCAATCACTGGTGCGTTTGATGCATGGGGACATTGAAATTGTGGAAAAGGAAATAGGTGAAAAAGGAACATGCTTTAGATTCAATGTCCTCCTTCACGTATGTGAGACAGTCACAGGTGGTAATAACACTAAAGAAGATAATGATTTAGGAGGTGACATAAATCTCAATCAACTTCAGGGACAAGATATAAACACCCCTAGTTCTGGTTCTAGCATATGTTCCCCTAGCCAAAAATTACCTATTTTTGCCTCTAGTAGGTCAGGGGCCTCTTGCATTATTCTTCTGATACAAAACAAAGAGCGACGAAGGACTACTCGAAGGTTCGTGGAGAGCTTAGGGATTAGAGTTAAGGTTGTGAAGCAGTGGGAACACTTGTCTCATACTCTTAAGAAGATCAAGCAAAAGAGGCTTAATTCTAGCCAGAGGTCCATAGGAACATCAAACAGTAGTTCTAGGTCTACATCTCAAAATTCTAATTCCAGGGCCAAAGGATTTCCTTTGAGTGCTACAGATAGAATTGACTATATGCCTTCGATTTTTAATAAGTTAGAAGATAGAGCTTCCTTGGGTTTGGTGCTGCTTGTGATTGATTCAATTGCAGGACCCTTTTCAGAACTTAGCAAAATGGTGTTAGCATTTAAAAAAGACTTTGGGAGTCCTTGCAAGGTGGTTTGGTTAAATAATCCACTTGTGTCTGGAGACAATTTCAAAGCACTTGATGAAGATGCATTAGATCCTGATGACATTATCTTGTCCAAGCCATTTCATGGTAGTCGTTTGTTTGAAATCATAAGGCTTCTTCCGGAGTTTGGTGGTAGTTCAACTAATATATCTAGAAATGGAAGAATAAGGAGGGAAATTTTTAACGGTAGACTTAAGAAACCATTCAAAGATTCCCACATGACAAGATATCAGTCACCTATATCAGACACAGTCAAATTTCCCTCAGCTAATGCAACCCCATTTCAAGACCATGCTAGTTCATCAAGGAGGGATCAGCTGTATTCTTTAAGTAGGATAGCTTGCAAGACTTTGATACAGCTAGGTGCAAGTGCAGCTAATGTGAAGGAATGCGAAGAAGCAGTGAATCTAGTTGAAGAGAGCTTAAAAGGGGCTTCTCCTTATGATTACATCATAATGGACTGTGAGATGCCAGTAATGAATGGATTTGAGGCAACAAAGCTGATAAGGAAGATGGAGAAGAGGTATGGGGTTCACATACCTATCTTGGCCTTAACGGCTCATACGTCAGGGGAGGAGATCAACATGACCAAGGAGGCAGGAATGGACGCTCATTTAGACAAGCCACTTAGAGCACACCATTTACTGGCTGCCATAAAAAACACACTGAATTGA 3852 0.4039 MEEVVLLVDDLKLLSGISRCRICHEEEFESSESFEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLKEYEPGYTAPSKKSLINDEALTIRDSLQIPRDEEPLSARSEGSDDEGITTEGDYSECTSTADRSASCCRSLALTFTLMLLVRHLFVVLTNTEEDYPFSLLTVFILKASGIILPMYIIMWAIGGIYGNIRRHYQDSDDDISISDSEDEDSELMHDTIALVAMIVVLSLTPCWYVMIKRVEQRVNSNSQNFLLELQDEIDHSAKLLPPMKSTSANLARILSSTFNKTTNISFSDIETKVAPLLFHAFEMIPQLSEISYIGTDGLFFSYYTEHNQNLAMYSNSSFSSEIIYYVQPVNLDTGGLYGEAVIYKHPVDTTWTKEAIKSSNGYASLGYKWSDNHEILYLNLVRISRTGVISVGLPAKIIADFVAPTRRQGASLYLASKDGKVLQKGIQNAHIEFYDDTASFYSVKPNGELLSYQGTLSCKAEAIASVLKIGGTRYLTRCSSIDIMGVELVYVLAIPQNGLVTFVHESRKRGLVLMSTMIVMILVSIFSFLWLNAIMGWREMHLCVSLIKQMEDTRQAERKSMNKSLAFASASHNIRAFLAGLTGLIEMSDEEAIPGSELEANLKKMSACTENLLGLLNSILDTSKVEAGKMQLDEEEFDLSQVIEEAIDWYYTAAMKKGVDLVLDHCNGSVIRYSHVKGDKGKLKQVLYNLVSNSVKFTNEGHIAVRAWAQTPSFHNSIMASKRYNFIKHLTCLFYKKNESDVQVEVRDAIQQDPNLLQFVFEVDDTGKGIPKEKHNSVFDNYVQVKENASGVTGLGLGIVQSLVRLMHGDIEIVEKEIGEKGTCFRFNVLLHVCETVTGGNNTKEDNDLGGDINLNQLQGQDINTPSSGSSICSPSQKLPIFASSRSGASCIILLIQNKERRRTTRRFVESLGIRVKVVKQWEHLSHTLKKIKQKRLNSSQRSIGTSNSSSRSTSQNSNSRAKGFPLSATDRIDYMPSIFNKLEDRASLGLVLLVIDSIAGPFSELSKMVLAFKKDFGSPCKVVWLNNPLVSGDNFKALDEDALDPDDIILSKPFHGSRLFEIIRLLPEFGGSSTNISRNGRIRREIFNGRLKKPFKDSHMTRYQSPISDTVKFPSANATPFQDHASSSRRDQLYSLSRIACKTLIQLGASAANVKECEEAVNLVEESLKGASPYDYIIMDCEMPVMNGFEATKLIRKMEKRYGVHIPILALTAHTSGEEINMTKEAGMDAHLDKPLRAHHLLAAIKNTLN 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0168 1283 ProSiteProfiles Histidine kinase domain profile. 601 865 IPR005467 -
Lele08g0168 1283 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 583 662 IPR036097 GO:0000155|GO:0007165
Lele08g0168 1283 SMART REC_2 1163 1278 IPR001789 GO:0000160
Lele08g0168 1283 SMART ringv_2 19 68 IPR011016 GO:0008270
Lele08g0168 1283 SMART HisKA_10 594 660 IPR003661 GO:0000155|GO:0007165
Lele08g0168 1283 CDD RING_CH-C4HC3_MARCH 20 67 - -
Lele08g0168 1283 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Lele08g0168 1283 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Lele08g0168 1283 MobiDBLite consensus disorder prediction 101 126 - -
Lele08g0168 1283 Pfam Protein of unknown function (DUF3675) 73 189 IPR022143 -
Lele08g0168 1283 CDD HisKA 595 656 IPR003661 GO:0000155|GO:0007165
Lele08g0168 1283 ProSiteProfiles Response regulatory domain profile. 1159 1282 IPR001789 GO:0000160
Lele08g0168 1283 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 710 863 IPR003594 -
Lele08g0168 1283 Gene3D - 581 661 - -
Lele08g0168 1283 SMART HKATPase_4 710 865 IPR003594 -
Lele08g0168 1283 CDD REC_hyHK_CKI1_RcsC-like 1171 1278 - -
Lele08g0168 1283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 78 IPR013083 -
Lele08g0168 1283 SUPERFAMILY CheY-like 1172 1282 IPR011006 -
Lele08g0168 1283 MobiDBLite consensus disorder prediction 970 997 - -
Lele08g0168 1283 PRINTS Bacterial sensor protein C-terminal signature 791 805 IPR004358 GO:0016310|GO:0016772
Lele08g0168 1283 PRINTS Bacterial sensor protein C-terminal signature 823 841 IPR004358 GO:0016310|GO:0016772
Lele08g0168 1283 MobiDBLite consensus disorder prediction 965 997 - -
Lele08g0168 1283 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 649 861 IPR036890 -
Lele08g0168 1283 SUPERFAMILY RING/U-box 19 71 - -
Lele08g0168 1283 Pfam Response regulator receiver domain 1173 1279 IPR001789 GO:0000160
Lele08g0168 1283 Gene3D - 1168 1282 - -
Lele08g0168 1283 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Lele08g0168 1283 Gene3D - 662 869 IPR036890 -
Lele08g0168 1283 PANTHER TWO-COMPONENT HISTIDINE KINASE 277 1279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0168 Lele-ChrLele08 1039303 1046890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0168 239 1269 Histidine Kinase Gene Family AT2G47430 38.159 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele08g0168 HATPase_c 2.8e-23 CL0025