LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele08g0160	ATGGATGGTACTGCATCCCCAAAACTTGAATCACAAGCATCTCAAGAGCTCAACCCAAAAGAAGCTCAACCACTCAAAAAACGGAAAACAGTTCAGAAGACAATTGTGACAGTGAGAGTTGGAGAAAATGAAAGCAAACTTAAGAACGAAGGGCTGGCTCCTGATTCCTGGTGTTGGAGAAAATATGGACAAAAGCCTATTAAAGGATCTCCTTACCCAAGGGGCTACTACAGGGGCAGCACCTCCAAGGGTTGTTCAGCCAGAAAACAAGTAGAGAGATGCATAACAGATGCTTCAATGCTCATCGTTACTTATACCTCTACTCATAACCATCCACCTCCTGATCGTCCCTCCAGCTCCAATCTAAACCCACAACAAAAATCCCAAAACCAGACCGCAGAAGAGAAAGAAGAGAAAGTGGAAGAGCAAGAAGAGAAAGAAAGGGAAAAGGATCATAAGCCAACGACGGGCCGTGATCAATGTGTGAAGGAAGAAAATTTCTATTACTTGCAATCGCCAATTCAGTGCTCTCGAGACATTATTGTTGACCAAGAAGATCCTTTCGAAGTGAACCCAGAGAAAACACAAGGTAAAATAGATCTCCTCCTAGAAAAAGAGCTCCCGAGTTATTCTCAGTTCGAGAACCCGTCGTCAACACCCACATCCGAAGAACATGACTTTTTCGATGAACTTGATGAGCTGCCCATATCTTCACCTTTCTTAAATTTAATGAGGCGAAATGTCTCCGAGGAAAGGATTGTGGTTACCCCTTCATGA	777	0.435	MDGTASPKLESQASQELNPKEAQPLKKRKTVQKTIVTVRVGENESKLKNEGLAPDSWCWRKYGQKPIKGSPYPRGYYRGSTSKGCSARKQVERCITDASMLIVTYTSTHNHPPPDRPSSSNLNPQQKSQNQTAEEKEEKVEEQEEKEREKDHKPTTGRDQCVKEENFYYLQSPIQCSRDIIVDQEDPFEVNPEKTQGKIDLLLEKELPSYSQFENPSSTPTSEEHDFFDELDELPISSPFLNLMRRNVSEERIVVTPS	258

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele08g0160	258	Coils	Coil	123	153	-	-
	Lele08g0160	258	FunFam	WRKY transcription factor 65	33	114	-	-
	Lele08g0160	258	SMART	WRKY_cls	53	113	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele08g0160	258	MobiDBLite	consensus disorder prediction	105	164	-	-
	Lele08g0160	258	MobiDBLite	consensus disorder prediction	63	83	-	-
	Lele08g0160	258	ProSiteProfiles	WRKY domain profile.	48	114	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele08g0160	258	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	11	240	IPR044810	GO:0003700
	Lele08g0160	258	MobiDBLite	consensus disorder prediction	1	19	-	-
	Lele08g0160	258	Gene3D	WRKY domain	40	115	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele08g0160	258	MobiDBLite	consensus disorder prediction	105	130	-	-
	Lele08g0160	258	SUPERFAMILY	WRKY DNA-binding domain	51	114	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele08g0160	258	Pfam	WRKY DNA -binding domain	55	112	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele08g0160	258	MobiDBLite	consensus disorder prediction	1	31	-	-
	Lele08g0160	258	MobiDBLite	consensus disorder prediction	131	160	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele08g0160	Lele-ChrLele08	989758	990764	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele08g0160	26	240	WRKY Transcription Factor Family	AT4G01250	37.674	4.05e-32	117

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lele08g0160		WRKY	1e-21	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele08g0160	08	989758	990764	Lele08g0160	08	989758	990764	ECH
	Lele05g0338	05	1930406	1931432	Lele08g0160	08	989758	990764	hybridization
	Lele06g0157	06	957880	958876	Lele08g0160	08	989758	990764	hybridization