Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0157 ATGTCGAAGCGGAAGTTCGGGTTCGAAGGATTTGGCATCAACCGCCAATCGACCTATAATTTTGAGAGATCTCAAGCTCCTCAGCGACTGTATGTTCCTCCTTCATCACGTCACGGGCATGACAATTACGAGGACACTGACCTTGACAACATCGAATATGACGATAATGATGCTCCCAAAGATGGAAACAATGGCAATGACAGCAAGAACGATGGCAACAGCGACGATATTGATCCCCTTGATGCTTTCATGGAAGGGATTCACGAGGAAATGAAAGCCGCGCCACCTCCGCAGCCGAAAGAGAAGGCAGAGGACATGTATAGAGATGACGATGAGGACGACCCGATGGAGAGTTTCTTGAGGGCGAAGAAGGACGTAGGGTTGACCCTGGCGTCCGATGCTCTGCACGCTGGATATGACTCGGATGAGGAGGTTTATGCAGCTGCGAAAGCTGTAGACGCGGGAATGATAGAATATGACTCTGACGACAACCCCATTCTTGTCGACAAGAAGAAAATTGAGCCTATTCCTGCCCTGGACCACAGTTCCATTGAGTACGAGCCATTTAACAAGGATTTTTACGAGGAGAAACCTTCAATATCAGGTATGAGCGAGCAAGATGTTGCTGAATACAGGAAGAGTTTGGCCATTCGTATATCAGGTTTTGATGTTCCGAAGCCAATTAAGACCTTTGAAGACTGTGGTCTCTCTCCACAACTTATGAACGCTATAAAGAAGCAAGGCTATGAGAAGCCAACATCAATACAACGCCAAGCTTTACCAGTTGTGCTCTCTGGCGGAGATATAATCGGTATAGCAAAAACTGGTTCTGGTAAAACTGCTGCCTTTGTCCTTCCTATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAAGAAGGTCCAATAGGAGTTATCTGTGCTCCAACTAGGGAACTGGCACATCAGATATACTTGGAGGCGAAGAAATTTGCAAAACCCTATGGGTTACGCGTCTCTGCTGTCTATGGTGGAATGTCAAAACTGGATCAGTTCAAAGAAATCAAGGCAGGCTGTGAGATAGTTGTTGCTACCCCTGGCAGATTAATAGACTTGCTGAAAATGAAGGCACTTACAATGATGAGAGCTACTTACTTGGTGCTTGATGAGGCTGATCGGATGTTTGACCTTGGATTTGAGCCACAAGTAAGGTCCATCGTTGGTCAGATCAGGCCTGATCGCCAAACTTTACTTTTTTCTGCGACAATGCCCCGTAGAGTTGAGAAGTTGGCCAGGGAAATTCTTAGTGATCCTGTTAGAGTGACAGTTGGGGAGGTTGGAATGGCAAATGAAGACATTACTCAAGTTGTTCAAGTGATTTCTTCTGATGCAGAGAAATTGCCATGGCTTCTTGAGAAGCTGCCTGGAATGATTGATGAAGGCGATGTCTTGGTGTTTGCTTCCAAAAAGGCTACCGTGGATGAAATTGAATCACAACTGGCACAAAGAGGCTTTAAAGTGGCAGCTCTGCATGGTGATAAAGATCAAGCTTCTCGAATGGATATCTTACAGAAGTTTAAATCTGGTGCTTACCATGTTCTTATTGCAACCGATGTTGCTGCTCGTGGTCTTGACATCAAATCAATTAAGTCAGTGGTAAACTTTGATATTGCAAAAGATATGGATATGCATGTACATCGCATTGGCAGAACAGGTCGTGCCGGTGACAAAGATGGGACTGCATACACTCTTATAACTCAGAAAGAAGCACGTTTTGCCGGTGAGCTGGTTAATAGCTTAATAGCAGCTGGTCAGAATGTGTCCATGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCCAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAAGGTAAGGGGAGGGGAGGGGGTGGCGGTAGAGGCGTGCGTGGAGTGGATTATGGTTTGGGTATTGGATATACTCCGGAGTCCAATAACCCTTCACCTAGTACAACAAGTCGGTCTGCTGCTGCCAACTCACTGCGGACAGGGATGATGGCACAATTTAAGGGCAACTTTGTTGCTGCTTCATCAAACTCTCAAAACCAAAGCTACGCTAACAGCACAAGTATGCCTGCTAATAAGAGACCCGCCCTCGCTGGCTTCGTATCTGGTGGGTCAATTGGGGGTGATGTAAAAACGAATCAGACTCCTGCTTCATCGAGACCTGCTAATTCAGCTGTAAATGCTAGTAGTCACAACTCTGGAGTTGACGTTGGTCAGAGGAATACCGACAGCAGCTCCAGGCCTCGAGAAAGAAGGAGGCCTTCAGGCTGGGACAGATAG 2319 0.4631 MSKRKFGFEGFGINRQSTYNFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIEYDDNDAPKDGNNGNDSKNDGNSDDIDPLDAFMEGIHEEMKAAPPPQPKEKAEDMYRDDDEDDPMESFLRAKKDVGLTLASDALHAGYDSDEEVYAAAKAVDAGMIEYDSDDNPILVDKKKIEPIPALDHSSIEYEPFNKDFYEEKPSISGMSEQDVAEYRKSLAIRISGFDVPKPIKTFEDCGLSPQLMNAIKKQGYEKPTSIQRQALPVVLSGGDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYGLRVSAVYGGMSKLDQFKEIKAGCEIVVATPGRLIDLLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRRVEKLAREILSDPVRVTVGEVGMANEDITQVVQVISSDAEKLPWLLEKLPGMIDEGDVLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGAYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGGGRGVRGVDYGLGIGYTPESNNPSPSTTSRSAAANSLRTGMMAQFKGNFVAASSNSQNQSYANSTSMPANKRPALAGFVSGGSIGGDVKTNQTPASSRPANSAVNASSHNSGVDVGQRNTDSSSRPRERRRPSGWDR 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0157 772 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 229 257 IPR014014 GO:0003724
Lele08g0157 772 CDD SF2_C_DEAD 447 579 - -
Lele08g0157 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 438 IPR027417 -
Lele08g0157 772 Gene3D - 191 436 IPR027417 -
Lele08g0157 772 Gene3D - 437 613 IPR027417 -
Lele08g0157 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 608 IPR027417 -
Lele08g0157 772 MobiDBLite consensus disorder prediction 652 668 - -
Lele08g0157 772 CDD DEADc_DDX42 240 436 - -
Lele08g0157 772 MobiDBLite consensus disorder prediction 756 772 - -
Lele08g0157 772 MobiDBLite consensus disorder prediction 71 106 - -
Lele08g0157 772 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 260 435 IPR014001 -
Lele08g0157 772 FunFam probable ATP-dependent RNA helicase DDX17 191 438 - -
Lele08g0157 772 MobiDBLite consensus disorder prediction 720 755 - -
Lele08g0157 772 MobiDBLite consensus disorder prediction 13 31 - -
Lele08g0157 772 MobiDBLite consensus disorder prediction 614 668 - -
Lele08g0157 772 Pfam Helicase conserved C-terminal domain 473 569 IPR001650 -
Lele08g0157 772 SMART ultradead3 248 450 IPR014001 -
Lele08g0157 772 SMART helicmild6 488 569 IPR001650 -
Lele08g0157 772 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 460 609 IPR001650 -
Lele08g0157 772 MobiDBLite consensus disorder prediction 1 112 - -
Lele08g0157 772 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 381 389 IPR000629 -
Lele08g0157 772 Pfam DEAD/DEAH box helicase 253 424 IPR011545 GO:0003676|GO:0005524
Lele08g0157 772 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 197 609 - -
Lele08g0157 772 MobiDBLite consensus disorder prediction 693 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0157 Lele-ChrLele08 969674 976756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0157 229 585 Eukaryotic Initiation Factors Gene Family AT3G13920 35.000 9.01e-62 212