LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele08g0143	ATGATAGGGCAGTCTGCAGCAAATCGAAGTGAAGACGATATGTGCGTGAGGAAAGGTCCATGGACTGTTGAAGAGGATACCATTCTCGCCAATTACGTGGCCCTTCATGGTGAAGGTCAGTGGAATTTTGCCGCTCGCTGTTCAGGTCTGAATAGAACGGGCAAGAGTTGCAGATTGAGATGGCTGAACTACTTGCGTCCCGGTGTTCGGCGTGGAAACATCACACTCCAGGAGCAGATATTGATTCTCGACCTCCATTCTCGCTGGGGAAATAGGTGGTCCAAAATTGCGGAGCATTTGCCAGGAAGAACAGACAACGAGATAAAGAATTATTGGAGAACCAGAGTGATAAAGCAGGCGAAGCAGCTCAAGTGTGACGTCAACAGCAAACAGTTCAGAGACGCCATGCGTTACGTGTGGATTCCCCGCTTGGTGGAGCGGATTCGGGCCTCGTCCGAAGATCGACACGGTTCGGGAACAGAGTGGAGGAGACCCGATTACTCTTGCACCCCTCCCTATGCGGGATCGGAGCTCCAAGTGGCTTCGAATTCAGACAGCAGCGAAACATCGGGTCATCCAATAGGAAACGGGTCGGTGACCCAGACAGTAGAGCAGGGAGACGCACCGGAGAATCTATGGAGCGACGAGAATATATGGTTTTTACGGGAACAACTTCGTGATGAGTTCTGA	690	0.5145	MIGQSAANRSEDDMCVRKGPWTVEEDTILANYVALHGEGQWNFAARCSGLNRTGKSCRLRWLNYLRPGVRRGNITLQEQILILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDAMRYVWIPRLVERIRASSEDRHGSGTEWRRPDYSCTPPYAGSELQVASNSDSSETSGHPIGNGSVTQTVEQGDAPENLWSDENIWFLREQLRDEF	229

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele08g0143	229	Gene3D	-	19	70	-	-
	Lele08g0143	229	MobiDBLite	consensus disorder prediction	177	201	-	-
	Lele08g0143	229	Pfam	Myb-like DNA-binding domain	71	114	IPR001005	-
	Lele08g0143	229	Pfam	Myb-like DNA-binding domain	18	65	IPR001005	-
	Lele08g0143	229	SMART	sant	70	118	IPR001005	-
	Lele08g0143	229	SMART	sant	17	67	IPR001005	-
	Lele08g0143	229	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	13	65	IPR017930	-
	Lele08g0143	229	SUPERFAMILY	Homeodomain-like	16	112	IPR009057	-
	Lele08g0143	229	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	15	187	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Lele08g0143	229	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	66	120	IPR017930	-
	Lele08g0143	229	FunFam	MYB transcription factor	75	138	-	-
	Lele08g0143	229	ProSiteProfiles	Myb-like domain profile.	17	65	IPR001005	-
	Lele08g0143	229	FunFam	Myb transcription factor	18	70	-	-
	Lele08g0143	229	ProSiteProfiles	Myb-like domain profile.	66	116	IPR001005	-
	Lele08g0143	229	CDD	SANT	20	65	IPR001005	-
	Lele08g0143	229	CDD	SANT	75	114	IPR001005	-
	Lele08g0143	229	Gene3D	-	75	116	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele08g0143	Lele-ChrLele08	877561	878524	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele08g0143	11	225	MYB Transcription Factor Family	AT2G47190	51.807	1.76e-76	230

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele08g0143		Myb_DNA-binding	8.6e-15	CL0123