Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0126 ATGGCTGGAGATGTGAGCAAAAACTACTACAATGTCATCGCTTGTGCGCCGGAGGCGGCCGGTAGCGGAAGAGCAGAGCCGCAATACGTCTCAGCGAAGATCTCTGTGTGGTGGGACATCGAGAACTGCCAAGTTCCAAAGGGCTGCGATCCTCACGCCATTGCTCAGAATATTAGTTCTGCACTCGTCACGATGAACTACTGCGGTCCCGTCTCCATCTCCGCATACGGCGACACAAGTCGGATCCCATCCTTCGTTCAGAAAGCACTCTCTAGCACCGGAATTTCGCTCAACCACATTCCAACTGGTGTGAAAGATGCCAGTGATAAGAAAATTCTAGTTGATATGTTGTTATGGGCAGTAGACAACCCTGCTCCAGCAAATTATCTGCTGATTTCTGGAGATAGGGATTTCTCAAATGCTCTGCATCAGTTGCGCCTGAGAAAATACAACATTCTTCTAGCACAACCACCAAAAGCATCAGCTCCTCTAGTGGCAGCAGCAAAATGTGTATGGCTCTGGACCAGCCTTTTATCTGGTGGGGCCCCACTATCAAGTGCCGAATTGTCATGCCTTGCAAGTGGTAACCATGTCTCCAATTCTGAGAGGATTCAAAATCCGGTTGCTGAGCCAAATCAAATTAGTCAGCCACTGTTTCTCAATTCTGAAAACCTTGATATGGGCAGTCAAAATACCTATACTACTAGAAGCGTTGCTGATTTGAAACACAAAGTAAAATGTGCTTTGAAAACTGACAATCAGCCCAACCTATCAAGCTCTTCAAGCTTACCTGTTACAGTTTCAGGGGGTAAGAACAATGATCCTCTTAAACTAGCAGAGTCACCAGTGAAGCTGTTCCCAAAAGCTCCACATGAATTCTTCTTTAGTAGCAAGCCCGTAGTCCCAAACGGTAGGTTCACTCCTAACCTTCCAAGCAACCAAGATTGCTCAGAAAATAAAAGGGGCAACTCTAATGAAATCCCTCAGGATGCCTATCATAGTTCTTCGAGGTCAAACAACCTTCATATACAGCCCATGTATGGACCGAATTTGCTTCTTCCTGTTCCTGATTCTCACACTGGAACATTTCAACCAGTTCCTCCTCATTCAGATGGATCTAAATTGTCTGCAGCCCCAAATTCATTTCATGATATGCCTAAGCTACATAATTCTCCATATCCTAGCAATGTCAAAAGTACTCTTATTTCTCATCAGCGAACCAGAGAAGATTCTAATCCAAGCACTGCTCAATCTCCTAATCTACATAGGTTACATGTACCCCCAGCAAGCTACGACCCTTCATGTGGCCAAGCATTTCATTATGAGAATTTGAACCAGAGGCATCCTTGTGGTTCTAAACAAATGCATTCTCCTTCCTTCACTGGAATTGCCAATACCAGTTCTAAGAATGTTATCTTGGGAGTTCAGGGATCTCCATCACCTTCTGAGTATGAGCAAGGCCTCATCGGCGTTATCCTACGAGCCTTAAACACTCTGAAGATTGAAAAGGTTATGCCAACTGAAGCAAATATAACTGATTGCATTTCTTATGGAGAGTTCAAATATCGAACTACTGAGGTCAAGAAGGCCTTAGATTGTGCAATCATGCTAAATGTGGTAGTAAAACAAAGACTAGGTGCATTACAGTTTTATGTTGGTAGAAACGAGAAACTATGGAATTGTGTAAACATTGTAGGTGGTAACGTTAGTCAGTATTCAAAAACAACATGGGATCGATTACAAGAGTTCCTTGCTTCATCATCAGGACGGTCAGCAATTCTGTCTTCCCAGTGCAGATATGAAGCATCTTTAATTCTAAGGAAAGAATGCCTTAAAGAGCTTATGTTAGGAGAGGTACATCAGATCTTGAATATGATCATCACGGTCAAGAAATGGATCATAACCCATCGGTCTGGATGGCAGCCGATTACTATTACGCTTAATGAGAGTGGAGATGATACAGGAAGTGTTCCGGAGTTAAAGTAA 1986 0.434 MAGDVSKNYYNVIACAPEAAGSGRAEPQYVSAKISVWWDIENCQVPKGCDPHAIAQNISSALVTMNYCGPVSISAYGDTSRIPSFVQKALSSTGISLNHIPTGVKDASDKKILVDMLLWAVDNPAPANYLLISGDRDFSNALHQLRLRKYNILLAQPPKASAPLVAAAKCVWLWTSLLSGGAPLSSAELSCLASGNHVSNSERIQNPVAEPNQISQPLFLNSENLDMGSQNTYTTRSVADLKHKVKCALKTDNQPNLSSSSSLPVTVSGGKNNDPLKLAESPVKLFPKAPHEFFFSSKPVVPNGRFTPNLPSNQDCSENKRGNSNEIPQDAYHSSSRSNNLHIQPMYGPNLLLPVPDSHTGTFQPVPPHSDGSKLSAAPNSFHDMPKLHNSPYPSNVKSTLISHQRTREDSNPSTAQSPNLHRLHVPPASYDPSCGQAFHYENLNQRHPCGSKQMHSPSFTGIANTSSKNVILGVQGSPSPSEYEQGLIGVILRALNTLKIEKVMPTEANITDCISYGEFKYRTTEVKKALDCAIMLNVVVKQRLGALQFYVGRNEKLWNCVNIVGGNVSQYSKTTWDRLQEFLASSSGRSAILSSQCRYEASLILRKECLKELMLGEVHQILNMIITVKKWIITHRSGWQPITITLNESGDDTGSVPELK 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0126 661 Pfam NYN domain 33 168 IPR021139 GO:0004540
Lele08g0126 661 MobiDBLite consensus disorder prediction 305 345 - -
Lele08g0126 661 MobiDBLite consensus disorder prediction 363 377 - -
Lele08g0126 661 MobiDBLite consensus disorder prediction 392 421 - -
Lele08g0126 661 CDD PIN_limkain_b1_N_like 33 157 - -
Lele08g0126 661 Gene3D - 29 176 - -
Lele08g0126 661 Pfam OST-HTH Associated domain 595 649 IPR025677 -
Lele08g0126 661 PANTHER LIMKAIN B LKAP 27 525 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lele08g0126 661 MobiDBLite consensus disorder prediction 305 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0126 Lele-ChrLele08 780215 782670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0126 25 262 C2H2 Transcription Factor Family AT5G61190 63.333 5.85e-86 289
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0126 08 780215 782670 Lele08g0126 08 780215 782670 ECH
Lele05g0306 05 1738701 1740782 Lele08g0126 08 780215 782670 hybridization
Lele06g0123 06 762341 764868 Lele08g0126 08 780215 782670 hybridization