Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0125 ATGAACAAGATATTCCTGCCTGGGGTTGCACTCATCCTGGTCGTAGGTTGTGCTGTCGGGACTATCCTCGTTGTCAGAAAAGGCGGTGACAGTGGTGGTGGTGGTGGTGGTGGTGAGTTGGCCTCCCACAACAGGGCCGTGACTGCGATATGCCAAGGCTCCGATAACAAGCAACAATGCGAAGATACTCTGGGGACCGTCAATTCCACGGATCCAAAAGATTATATCTCGACGACGGTAGCGAAAGTGATGCAAAAGGTGATAGGTGCCGTTAACATGAGCGACAAGCTCGCCGTCGAACATGGCTCCGAAAACAAGGGCGTTAAGATGGCCATTGATGATTGCCAGGACCTGCTGCAGTCGGCCATGGATTCACTCGAGGCCTCGAATGCTATGCTCAAAGGCGACGATATTAGAAGCATCGAGAACAGAACTGACGACCTCAGGAACTGGTTCGCCATGGTGTTATCCTTCCAAGAATCATGCTACGACGGGTTCGAGGATGGTGGCGGCGAGGAAAAGATCAGAGATACACTGCACACAGAAGGTGGTCTGGACGACATACAGAAGCTCACCGGAGTGGCGCTTGATGTTCTCTCCGGCCTCAACACCCTGCTTGCCGCATTCAACTTGGATTTGACAGTGAAGACTCCTTCTCGTCGTCTCCTGGAAGAAGGAGAAGATCCCAGTTGGTTGCATGAAGCTGATCGCAAGCTCTTGGCGGCGGCTAAACCTCTACCCAACGCAGTGGTTGCGCAAGATGGCAGTGGTCAATTTAAAACCATCACCGACGCTATTAATTCATACCCAAAGGACTTCAAAGGCAGATTCATTATCTACGTCAAAGCCGGAATCTATAATGAGTACCCTCTTATTGACAAGAAAAAACCCAATATTTACATGTACGGAGATGGCGCTACGAAAACCGTCATCACTGGAAACAGATGCGTGGAGCCCAAGAAGGAGTGGAGGACCTTCAACAGTGCCACCTTCGCCGTTGTTGGAGATATGTTCATTGCCAAGGGAATAGGATTCGACAACACAGCTGGTTCTGTCGGACATCAAGCAGTGGCGCTCCGGACGCAAGCAGCACATGCGGCATTTTTCCAGTGCGCGTTCCGAGGTTTCCAGGACACGTTGTACGTGCAAGCGGGGATTCAGTTGTTCCGGGAGTGTGAAATCACAGGAACCATCGACTTCATATTTGGCGCGTCAAGAACTCTGATACAGAATTCACGTATCATTATGAGGAAGCCAATGCCGAACCAACAGAACATAGTGGTAGCAGATGGTACCTTGGACTCTAAGTCAGGGACTGGGACCGTGCTTCAGAACTGTGATATCTCGGCAGAGCCAGGGCTGGACAAGAACGTGAATCCTTGCTACTTGGCTCGTCCATGGAAGGCATTCTCTAAGGCCATCTTCATGGAAAGTAATCTGGCTGATATCATTCACCCCGATGGCTGGCTTCCATGGAGCGGTGATCAGTTCCTAAAAACTTGTTACTTCGCTGAGTATGCCAACACTGGACCTGGTTTTAGTCCTGCCACCAGGGTCAAGTGGGGTCGAGGCCTCCTTAACAAGGGTCAAGCTTCTACATATACTGCTACTCGATACCTCGAAGGTGCTGGTCTCCCATGGTTGGGTGCCACTGGCGTTCCTTTCGATGCTGGCTTGACCAAGGCTTAG 1689 0.5104 MNKIFLPGVALILVVGCAVGTILVVRKGGDSGGGGGGGELASHNRAVTAICQGSDNKQQCEDTLGTVNSTDPKDYISTTVAKVMQKVIGAVNMSDKLAVEHGSENKGVKMAIDDCQDLLQSAMDSLEASNAMLKGDDIRSIENRTDDLRNWFAMVLSFQESCYDGFEDGGGEEKIRDTLHTEGGLDDIQKLTGVALDVLSGLNTLLAAFNLDLTVKTPSRRLLEEGEDPSWLHEADRKLLAAAKPLPNAVVAQDGSGQFKTITDAINSYPKDFKGRFIIYVKAGIYNEYPLIDKKKPNIYMYGDGATKTVITGNRCVEPKKEWRTFNSATFAVVGDMFIAKGIGFDNTAGSVGHQAVALRTQAAHAAFFQCAFRGFQDTLYVQAGIQLFRECEITGTIDFIFGASRTLIQNSRIIMRKPMPNQQNIVVADGTLDSKSGTGTVLQNCDISAEPGLDKNVNPCYLARPWKAFSKAIFMESNLADIIHPDGWLPWSGDQFLKTCYFAEYANTGPGFSPATRVKWGRGLLNKGQASTYTATRYLEGAGLPWLGATGVPFDAGLTKA 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0125 562 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Lele08g0125 562 Pfam Plant invertase/pectin methylesterase inhibitor 46 197 IPR006501 GO:0004857
Lele08g0125 562 Pfam Pectinesterase 248 542 IPR000070 GO:0030599|GO:0042545
Lele08g0125 562 TIGRFAM PME_inhib: pectinesterase inhibitor domain 42 173 IPR006501 GO:0004857
Lele08g0125 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 203 IPR035513 -
Lele08g0125 562 Gene3D - 243 559 IPR012334 -
Lele08g0125 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 196 IPR035513 -
Lele08g0125 562 SMART PMEI_2 42 198 IPR006501 GO:0004857
Lele08g0125 562 FunFam Pectinesterase 4 246 559 - -
Lele08g0125 562 SUPERFAMILY Pectin lyase-like 247 557 IPR011050 -
Lele08g0125 562 CDD PMEI-like_3 49 204 - -
Lele08g0125 562 PANTHER PECTINESTERASE 17 549 - -
Lele08g0125 562 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0125 Lele-ChrLele08 770272 772039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0125 9 559 Carbohydrate Esterase AT3G05610 36.477 4.41e-122 372