Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0111 ATGAACGACGACCCCATCGATCGTCCTATCATCAAAGAAATGGATTTCTTCTCTTGTGCTTCACCCGGTAAATCTTTCGAGACTAGAAAGCAGCGGCACCAAGATCCTGACGACAGGATCAATCACGATGGATCATCAACTGCTCTCTCACCTGATCGCCCCGTTAACACTGGACTGAATTTGAACTGTGCAAGTTCTGGAATACCAAGATTCGAAAACGATCAGGAGAAGCTCGATACAGAAATGAGTGCACTTCAAGGGGAATTGCGGAGGCTTCATGAAGAGAATCAGAAGTTGAAAAATATGCTGGAACAGATCACCAAAAGCTATAACCAACTGCAGGCACATTTGTTTATCGCTATGCATAAACAAAAGGCTCAGAATGTTGAAGCAAATGGGATGTTGTCGGGGCATGAGATATTGGACCCACGGCCGTCTACCAAATCAAAAGTGAATAATTCGGGTTCAGACGACAAGACTCAAGAGCTTTCAGTCTCTCCTTCATCAAACAATGCGGTCATGTCAAAGCAACTCCATCAATCACCTAAACTTCATGGAAAGCAAGCAGCTTGCCCTGAAACTATTTCCAAATTACCAGATCTCAAAAGCCAAGAACCAAAGGCGGATATTCATTTTAGAAAAGCCAGGGTTTCCGTACGTGCAAGATCAGAAGCTATTCTGATTAGTGATGGATGTCAATGGAGGAAATATGGTCAAAAAATGGCCAAGGGTAACCCTTATCCTCGCGCCTACTATCGTTGTACTATGGCCGTAGGATGCCCCGTTCGTAAGCAGGTGCAAAGATGTGTTGAAGACAAGACGGTGTTGATAACAACGTACGAAGGGAATCACAACCACCCCCTCCCAACGGCGGCCACCGCCATGGCAAATACGACATCGGCAGCCGCAGCGATGCTTCTATCAGGTTCAACTATGAACAATGAAGCCTTAATAAATTCAGGTGGAGGGTACTTGTCGTCCATGCCCAACGCTTCAGTGGCAACCCTATCAGCCTCTCCACCGTTTCCTACTATCACTCTGGACTGGACTCAGACCCCCAAAAGCGTGCAGCTTCACCGGCCACCGTCCCATGGGGTTACGTTTCCTCTGCCATTGCACGGTCACCCACTGCACTGTCATCAGAAGCCACCGTTAGGGCAGCAACGGCAGCCTTCTATGGTTGAGACAATGAGTGCAGGTATTGCCTCTGATCCGAACTTCACAGCGGCGCTAGCGGCGGCGATTTCTTCTATCTTTGGGAGTAATTTGAATAGCGACGGGGGGAGTGGAAGTGGAAATGCTATTCCCCTTAAAGGGATTTCTGCGCCGCCTGAGCTTCCTCCGTCCTGCACAACATTCTCCACCAACTAG 1371 0.4821 MNDDPIDRPIIKEMDFFSCASPGKSFETRKQRHQDPDDRINHDGSSTALSPDRPVNTGLNLNCASSGIPRFENDQEKLDTEMSALQGELRRLHEENQKLKNMLEQITKSYNQLQAHLFIAMHKQKAQNVEANGMLSGHEILDPRPSTKSKVNNSGSDDKTQELSVSPSSNNAVMSKQLHQSPKLHGKQAACPETISKLPDLKSQEPKADIHFRKARVSVRARSEAILISDGCQWRKYGQKMAKGNPYPRAYYRCTMAVGCPVRKQVQRCVEDKTVLITTYEGNHNHPLPTAATAMANTTSAAAAMLLSGSTMNNEALINSGGGYLSSMPNASVATLSASPPFPTITLDWTQTPKSVQLHRPPSHGVTFPLPLHGHPLHCHQKPPLGQQRQPSMVETMSAGIASDPNFTAALAAAISSIFGSNLNSDGGSGSGNAIPLKGISAPPELPPSCTTFSTN 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0111 456 Gene3D WRKY domain 213 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele08g0111 456 MobiDBLite consensus disorder prediction 21 55 - -
Lele08g0111 456 MobiDBLite consensus disorder prediction 435 456 - -
Lele08g0111 456 SUPERFAMILY WRKY DNA-binding domain 221 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele08g0111 456 SMART WRKY_cls 228 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele08g0111 456 MobiDBLite consensus disorder prediction 137 172 - -
Lele08g0111 456 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 72 426 IPR044810 GO:0003700
Lele08g0111 456 FunFam probable WRKY transcription factor 31 213 290 - -
Lele08g0111 456 Coils Coil 75 116 - -
Lele08g0111 456 MobiDBLite consensus disorder prediction 146 172 - -
Lele08g0111 456 ProSiteProfiles WRKY domain profile. 223 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele08g0111 456 MobiDBLite consensus disorder prediction 26 42 - -
Lele08g0111 456 Pfam WRKY DNA -binding domain 230 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0111 Lele-ChrLele08 671770 674723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0111 74 419 WRKY Transcription Factor Family AT4G04450 42.607 3.75e-78 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele08g0111 WRKY 2.7e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0294 05 1657328 1659839 Lele08g0111 08 671770 674723 hybridization
Lele06g0109 06 680912 683408 Lele08g0111 08 671770 674723 hybridization