Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0109 ATGGGGAAAGCCTCTAGCTCTTCTTCTTCCTCTATCAGCAGCAACAACCACCCACTTATCTCCACCGCTTCATCCCTCACTCGCCTCCATAGCTCTGATCTTCCTACGGATCTCAGGCTTGGTCTCAGCATTTCTGCAACACAACATGTTGGCTCTTCTGTTTCAAGGGGTCAAGGAACAGATTATTGGATCCCAAACCAGCGAGCTCATGCGGCAGAAGTAAATGATTGTGGCGATCATAGCAGCTTGTTTGTAAAGGTGTACATGGAAGGCATTCCAATAGGCAGAAAACTCAATCTGGTAGCTCACGATGGCTACCATGGGTTAGTGAGGACTCTGGAAAACATGTTTGACACTACCATTCTCTGGGGCACAGGGATGGATGGGGTGCAACCAGAGAGGTGCCATGTGCTAACATACGAAGACGAAGAAGGAGATTTGGTGATGGTCGGCGATGTTCCATGGGAAATGTTCCTATCAACAGTGAAGAGATTGAAGATAACGAGGGTAGACGCATTCGGGTGTTAG 528 0.483 MGKASSSSSSSISSNNHPLISTASSLTRLHSSDLPTDLRLGLSISATQHVGSSVSRGQGTDYWIPNQRAHAAEVNDCGDHSSLFVKVYMEGIPIGRKLNLVAHDGYHGLVRTLENMFDTTILWGTGMDGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDAFGC 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0109 175 Pfam AUX/IAA family 72 169 IPR033389 -
Lele08g0109 175 ProSiteProfiles PB1 domain profile. 82 172 IPR000270 GO:0005515
Lele08g0109 175 SUPERFAMILY CAD & PB1 domains 79 167 - -
Lele08g0109 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 63 170 IPR003311 GO:0005634|GO:0006355
Lele08g0109 175 Gene3D - 77 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0109 Lele-ChrLele08 657531 658330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0109 86 167 B3 DNA Binding Superfamily AT4G23980 39.024 7.59e-12 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele08g0109 AUX_IAA 7.1e-29 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0292 05 1646232 1647131 Lele08g0109 08 657531 658330 hybridization
Lele06g0107 06 663802 670523 Lele08g0109 08 657531 658330 hybridization