Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0102 ATGGCTTTTTCATTCTCAGCGCAGTTGGTGCAAAGTCAGAACTCACTTCCTCGTCTTTCTCACTTTCAGGGTAATTATAGCCATCATGTGTCGAAGGTTCGGAGGTCACATATGATTTGTAGCAGTTCAAAATCACAGCTTGGCTGCACTAAAGCATTGGCATCAAAATCTCATTATGCCTCAACTTTTTCTGTCTCAAAACAGTCCGGAGTAAAAGCAATCTCATATAAGAGAATGGCATGTATCAACGCTGACCAAAGTGTTGTAGAGCTGCAAGCCAAAGTGACGAACAAGTGTTTCTTTGACGTAGAAATTGGGGGTGAATCTGCTGGCAGGATTGTTTTGGGCCTATTTGGAGAAGTCGTGCCCAAAACTGTTGAAAATTTTCGTGCTCTGTGTACAGGAGAGAAAGGATATGGTTACAAGGGATCCCACTTCCACCGTATAATCAAAGATTTCATGATTCAGGGAGGGGACTTCACTGAAGGAGATGGAACTGGAGGAATCAGCATCTACGGCTCTAGTTTTGAAGATGAGAGTTTTGACTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCAGGTCCTAATACTAATGGTAGTCAATTTTTCATTTGTACTGTAAAGACTCCATGGCTGGACAATCGTCATGTTGTTTTCGGACAGGTTGTTGATGGAATGGATGTCGTGAAGACGCTTGAATCCCAGGAGACAAGCAGGTATGATGGCCCTCGGAAGCCGTGCAGAATTGTTAATTGCGGAGATCTGCCTTTAGAGGCTTGA 789 0.4373 MAFSFSAQLVQSQNSLPRLSHFQGNYSHHVSKVRRSHMICSSSKSQLGCTKALASKSHYASTFSVSKQSGVKAISYKRMACINADQSVVELQAKVTNKCFFDVEIGGESAGRIVLGLFGEVVPKTVENFRALCTGEKGYGYKGSHFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGQVVDGMDVVKTLESQETSRYDGPRKPCRIVNCGDLPLEA 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0102 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 146 158 IPR002130 GO:0000413|GO:0003755
Lele08g0102 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 204 216 IPR002130 GO:0000413|GO:0003755
Lele08g0102 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 132 IPR002130 GO:0000413|GO:0003755
Lele08g0102 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 217 232 IPR002130 GO:0000413|GO:0003755
Lele08g0102 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 189 204 IPR002130 GO:0000413|GO:0003755
Lele08g0102 262 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 141 158 IPR020892 GO:0003755|GO:0006457
Lele08g0102 262 CDD cyclophilin_ABH_like 98 256 - -
Lele08g0102 262 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 101 256 IPR002130 GO:0000413|GO:0003755
Lele08g0102 262 FunFam Peptidyl-prolyl cis-trans isomerase 84 262 - -
Lele08g0102 262 Gene3D - 83 261 IPR029000 -
Lele08g0102 262 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 98 257 - -
Lele08g0102 262 SUPERFAMILY Cyclophilin-like 93 258 IPR029000 -
Lele08g0102 262 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 100 257 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0102 Lele-ChrLele08 607376 610111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0102 111 255 U-box Gene Family AT5G67530 44.521 2.81e-30 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0283 05 1594809 1597257 Lele08g0102 08 607376 610111 hybridization
Lele06g0101 06 622097 624910 Lele08g0102 08 607376 610111 hybridization