Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0100 ATGTACACTACATAGAAATTTCTTTTCCGCATCCCCTCTCCTGTTCCCGTTTATCACTCAGTGCTTTGCGGATTTCGAAGCCGCTGGCCATGCCTGAGTGATTCGATGCCATGGGTCGAATCGTTTGGGGCTTGGTTGCCTATGTTTATTGATCTGTCTGTGGGAGCGCTCGATCCACCGCTTTATTTGTGTATTAAGCAGTACCCACAAGAGCGTGTTGGCTTCTTTTATGTAGTTTCTCTGAGAACACTGTATGGGTTGGACTGCTTTCAGCCTGGGAATATGGTGATGATGATGCATGGTCACGTGAGCAATCATGGGTTGGTTGAGTTACAGAAACCATTTTTCAGCATATCAGAATCAGGGGCATTTGCAATAATGGGTAACGGCACTTCACGTGTTGTTGGCTGTTTAGTGCCATTTAATGGCAAAAATGGAGTTGATTTGGAGTTCCTGGAGCCACTGGACGAAGGATTGGGCCATTCTTTCTGTTATGTGCGGCCATCTATTTTTGAATCTCCTGCCATTACACCGTCAAATTCTGAGAGGTTTACTGTTGATTCGAGCACCCTTGATTCTGAAACTTTTAGTGGATCGTTTAGGCATGACAGCATGGAAGATCCCTCTGGCATACACAAACCGGCCAAGTGCTTCCCTGAGACCACATTCAAAACGATTTCAGGGGCTTCAGTCAGTGCCAATGTCTCAACCGCAAGGACTGGTAATCAGAGTGGATTATTTTCTAGTGAGTTCCAAGAGCCAGCTGCATCATTTGAGGGAACCTCTTCATTTGCTGCAATCCCTTTGCAACCTGTTCCCCGTGGTTCTGGAACTTCAAATGGTTTCATGTCTGGACCTCTAGAGAGAGGCTTTGCTTCAGGTCCATTGGATAGGGGTGGTGGCGGTTTCATGTCTGGACCAATAGAGAAGGGAGTCATGTCAGGTCCTCTTGATTCCACTGACAAATCCAACTTTTCTGCACCGCTTGCTCGAAGTGGTCGTAGGCCACGTCTCCAAGAGCTCATGAGGAGTGTGAGTGGACCGATGAAAAACACTTTTTCCCGGACCTTCTCTAAGCATTCTAGTGGTGGCAGTTGGATGCGGCGGTTGTTTTTTCACCCAGTGACCCAATTGGCTTGGCATTCCAAAGATGCAAAGTTTCGACAAGAAGTCTCTAGAAACTGTATTGAAGTTGGGCCATCTGAAGGGGAGTATAAGCATTCACATAATTTACAGTGGGCTCATGGCAAGGCTGGTGAAGATAGGGTTCATGTAGTACTTTCTGAAGAACAAGGGTGGTTGTTTATTGGGATATATGACGGTTTTAGTGGACCAGATGCACCTGATTTTTTGATGAACCATCTTTATAGATTTGTAGACAAAGAACTGGAAGGGTTGCTTTGGGATTATGAAGTTAACCCTGTAGATCCGCTTCCACCTGAAATCCCTAAAACTGGAAATGCTGTGGTTGCTCCTGAGTACAGCCGGGAGGAACTGTCAGTTAATCATACTAATTCCAACCAAGATATTTTGTGCTGTTTAGAGGCTTCTTCTGGTCCAGCCAATGCCAAGGAGCAAACATCTTGCACTGAGATAGTTGAGGAAAACGTTGCATTTAAGGTAAATATTGAAAACCAGTTACCTAATTCTGGAAGTCCCAGTAACTCAGATGCTGTTCTCCCTTCTGTTCCACTTGGACAGTTAAGTGGTCAAGGTAGAAAAAGCATGCGGCTTTATGAGCTACTTCAGATGGAATCTTGGAATGAACGAGATTCCTTGTCTGTCTCAGAACAGGGCAAGGATTCTTATGTTCCTACAGAATCAAGGCAGGCAGGGTGGATGAGACTTTGTTCAGCTAATGCAAAAGAAGGTAGTTCTAGACATCTGGATGAAGCTCCCACCACATCAGGAGAAAATGTAGGGATTAGGTCTGAATCAGTTAGTCATGAGCCTGTAACTGCATTTACTGCTCTGGGACAAAGGCAGAATACCAGAAAGTCATTTCTTGGTACCAAAATTAAAAAAATGTACAGGAAGCAAAAGTCCTTGCGTAAGAAGCTTTTTCCTTGGAGCTATGATTGGCATAGGGAAGAAACTGGTGTTGATGAGAAAATATTAGAAGTCTCAGGACCCATTAGAAAATGCAAATCTGGAGTAGTAGATCATGATGCAGTTTTAAGAGCAATGACTCGAGCTCTTGACAGAACAGAAGAGGCATACATGGAAATGGTGGAGAATAATCTAGAAAAAAATCCAGAGCTTGCTTTAATGGGGTCATGTGTTTTAGTGATGCTGATGAAGGATCAAGATGTTTATGTCATGAACCTGGGGGATAGTCGTGTAATTTTGGCTCAAGAAAGGCCGAATGATCGTCATCCTAATTCAAGTTTTGTTAAGGATGATGTGAGGCATAGAAATCGATCCAGAGAGTCATTAGTACGGATGGAGCTGGATAGAATCTCGGAGGAGTCCCCAATTCACAATCAAAACAGTCATGTTCACAAGATGAACAAAAATAGAGAGATAGCAATTTGCAGGTTAAAAATGAGAGCTGTTCAGCTTTCCACTGATCACAGCACAAGTGTTGAAGAGGAAATTTTCAGAATAAGGGCAGAACACCCTGATGATAATCAATCCATTTTTAATGATAGAGTGAAAGGACAATTAAAAGTCACCAGAGCATTTGGTGCTGGATTCCTGAAGAGGGCATCTTTTAATGAGGTTCTACTAGAGAGGTTCCGAGTTGATTATGTGGGCGCTGCTCCTTACCTAAGTTTCAATCCTTCTATTCTGCATCACCGACTTTCTTCTAGTGATCGGTTCTTGGTACTCTCCTCCGACGGACTTTACCAGTACTTCAGCAATGAAGAGGTGGTTGCCCACATTACTTGGTTCATGGAAAATGTGCCTGAAGGCGATCCTGCACAATACCTGATTGCAGAGCTTCTCTTCCGTGCTGCTAAAAAGAATGGAATGGATTTTTATGAATTGCTCGACATTCCTCATGGAGATCGACGCAAATATCATGACGACGTATCTGTTATGGTGGTCTCTCTAGAGGGAAGGATTTGGCGGTCGTCTTACGATGGGATAGATCTTATTGACATTACCCTTCATCTGCCCGATACCCCATTCACTCAACAATACCTCCCTGCCTATATTTATCCGAACAAACCCCCCACCGTTTTCAACACCAAAACTTTCCTCTCTTCTCTTCATCGTCTCAACTCAACCATGTCGCCGGCAAATATTTTTGCTATTTTCTTCATCTTCTTCGGTTCCGTCTCCTTTGCCTTGGCTTCTGATCCTGACTTTCTTCAAGACCTCTGCGTCGCCCTTCCCTCTTCAGGAGTGAAGGTGAATGGTTTTGCGTGCAAAAACGAGGCAAACGTGACGGCAGACGATTTCTTCTTCGCCGGGATAGCGAAGCCCGGTGTGATCAACAACACAGTGGGTTCATTGGTGACCGGAGCGAACGTGGAGAAAATCGCTGGGCTTAACACTTTGGGTGTGTCTTTGTCCAGAATAGACTACAAGCCCGGTGGCCTTAACCCGCCCCACACACACCCGCGTGCCACGGAGATGGTGTTCGTGTTGGAAGGAGAATTGGATGTGGGCTTTGTCACAACATCCAATAAGTTCATTTCCAAGCACATCAAGAAAGGTGAGGTCTTCGTCTTCCCCAAGGGTCTCCTTCACTTCCAGAAGAACAAGGGCGATAAGCCTGCTTCTGTAATTTCTGCCTTCAATAGCCAGCTACCTGGTACCTTGTCCGTGGCTGCGGCTCTCTTCACGGCCACACCGGGTGTGCCTGATGACGTCCTCTCTCAAACCTTCCAGATTGCTACTAAAGAGGTCGACACCATCAAATCCAAGCTTGCTCCCAAGAAGACTTGA 3897 0.4514 MYTTXKFLFRIPSPVPVYHSVLCGFRSRWPCLSDSMPWVESFGAWLPMFIDLSVGALDPPLYLCIKQYPQERVGFFYVVSLRTLYGLDCFQPGNMVMMMHGHVSNHGLVELQKPFFSISESGAFAIMGNGTSRVVGCLVPFNGKNGVDLEFLEPLDEGLGHSFCYVRPSIFESPAITPSNSERFTVDSSTLDSETFSGSFRHDSMEDPSGIHKPAKCFPETTFKTISGASVSANVSTARTGNQSGLFSSEFQEPAASFEGTSSFAAIPLQPVPRGSGTSNGFMSGPLERGFASGPLDRGGGGFMSGPIEKGVMSGPLDSTDKSNFSAPLARSGRRPRLQELMRSVSGPMKNTFSRTFSKHSSGGSWMRRLFFHPVTQLAWHSKDAKFRQEVSRNCIEVGPSEGEYKHSHNLQWAHGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMNHLYRFVDKELEGLLWDYEVNPVDPLPPEIPKTGNAVVAPEYSREELSVNHTNSNQDILCCLEASSGPANAKEQTSCTEIVEENVAFKVNIENQLPNSGSPSNSDAVLPSVPLGQLSGQGRKSMRLYELLQMESWNERDSLSVSEQGKDSYVPTESRQAGWMRLCSANAKEGSSRHLDEAPTTSGENVGIRSESVSHEPVTAFTALGQRQNTRKSFLGTKIKKMYRKQKSLRKKLFPWSYDWHREETGVDEKILEVSGPIRKCKSGVVDHDAVLRAMTRALDRTEEAYMEMVENNLEKNPELALMGSCVLVMLMKDQDVYVMNLGDSRVILAQERPNDRHPNSSFVKDDVRHRNRSRESLVRMELDRISEESPIHNQNSHVHKMNKNREIAICRLKMRAVQLSTDHSTSVEEEIFRIRAEHPDDNQSIFNDRVKGQLKVTRAFGAGFLKRASFNEVLLERFRVDYVGAAPYLSFNPSILHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHITWFMENVPEGDPAQYLIAELLFRAAKKNGMDFYELLDIPHGDRRKYHDDVSVMVVSLEGRIWRSSYDGIDLIDITLHLPDTPFTQQYLPAYIYPNKPPTVFNTKTFLSSLHRLNSTMSPANIFAIFFIFFGSVSFALASDPDFLQDLCVALPSSGVKVNGFACKNEANVTADDFFFAGIAKPGVINNTVGSLVTGANVEKIAGLNTLGVSLSRIDYKPGGLNPPHTHPRATEMVFVLEGELDVGFVTTSNKFISKHIKKGEVFVFPKGLLHFQKNKGDKPASVISAFNSQLPGTLSVAAALFTATPGVPDDVLSQTFQIATKEVDTIKSKLAPKKT 1298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0100 1298 Coils Coil 726 746 - -
Lele08g0100 1298 FunFam germin-like protein subfamily 2 member 1 1101 1295 - -
Lele08g0100 1298 Gene3D - 379 541 IPR036457 -
Lele08g0100 1298 PRINTS Germin signature 1250 1265 IPR001929 GO:0030145
Lele08g0100 1298 PRINTS Germin signature 1187 1207 IPR001929 GO:0030145
Lele08g0100 1298 PRINTS Germin signature 1217 1237 IPR001929 GO:0030145
Lele08g0100 1298 SMART Cupin_1_3 1139 1287 IPR006045 -
Lele08g0100 1298 ProSiteProfiles PPM-type phosphatase domain profile. 404 1019 IPR001932 -
Lele08g0100 1298 SUPERFAMILY PP2C-like 416 1020 IPR036457 -
Lele08g0100 1298 CDD PP2Cc 721 1019 IPR001932 -
Lele08g0100 1298 ProSitePatterns Germin family signature. 1182 1195 IPR019780 GO:0030145
Lele08g0100 1298 SMART PP2C_4 404 1017 IPR001932 -
Lele08g0100 1298 Pfam Cupin 1141 1286 IPR006045 -
Lele08g0100 1298 Gene3D - 657 1026 IPR036457 -
Lele08g0100 1298 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 1096 1292 - -
Lele08g0100 1298 SUPERFAMILY RmlC-like cupins 1131 1293 IPR011051 -
Lele08g0100 1298 Gene3D Jelly Rolls 1101 1295 IPR014710 -
Lele08g0100 1298 MobiDBLite consensus disorder prediction 544 562 - -
Lele08g0100 1298 MobiDBLite consensus disorder prediction 544 567 - -
Lele08g0100 1298 CDD cupin_OxOx 1102 1293 - -
Lele08g0100 1298 Pfam Protein phosphatase 2C 843 989 IPR001932 -
Lele08g0100 1298 FunFam Protein phosphatase 2C 32 381 552 - -
Lele08g0100 1298 MobiDBLite consensus disorder prediction 269 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0100 Lele-ChrLele08 592835 601485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0100 127 1027 PP2C-type Phosphatase Gene Family AT2G46920 63.245 0.0 1103