Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0081 ATGGGTATAAAGGGTTTAACAAAGCTTTTAGCGGACAATGCTCCAAAATCCATGAAGGAGCATAAATTTGAGAGCTATTTTGGCCGCAAAATTGCCATTGACGCCAGTATGAGCATCTACCAATTCCTAATTGTCGTGGGAAGAAGTGGGACTGAGATGCTTACCAATGAGGCTGGTGAAGTTACAAGTCATTTGCAAGGCATGTTTTCACGGAGTATCAGACTTCTAGAAGCCGGAATAAAGCCAGTATATGTTTTTGATGGGAAGCCCCCAGAATTGAAGAAACAAGAGCTGGCCAAACGTTTCTCGAAGAGGGCTGATGCTGATGAGGATCTGTCTGAAGCCAAGGAGACTGGCACCAAGGAAGACATTGAGAAATTCAGTAAACGAACAGTGAAGGTGACAAAGCAACATAATGAAGACTGCAAAAGGCTTTTAAGACTCATGGGAGTGCCTGTGGTTGAGGCTCCCTCAGAAGCAGAGGCACAATGTGCTGCGCTTTGCAAGTCAGGAAAGGCAAGTGGTTATGTGTATCTGGCTTATATGAATGTTTATGCAGTAGCTTCTGAAGACATGGATTCATTGACATTTGGAGCTCCTAAATTTCTTAGACATTTGATGGATCCTAGCTCCAAGAAAATCCCAGTCATGGAATTTGAAGTTGCAAAGATTTTGGACGAACTAAATCTTACCATGGATCAATTCATTGACTTATGCATTCTTTCTGGGTGTGATTATTGTGATAGTATTCGAGGGATTGGGGGACTGACTGCCTTGAAACTTATACGCCAACATGGCTCTATAGAGAATATACTGGAGAATATAAACAAAGAGAGGTACCAAATTCCAGATGATTGGCCATATAAGGAGGCTCGGCAACTTTTTAAAGAACCATTAGTCTTAACTGAAGAAGAGCAACTTGATCTTAAGTGGACATCTCCAGATGAAGATGGGTTGCTTACATTTTTGGTAAATGAGAATGGTTTCAATGCTGACAGGGTCACAAAGGCAATAGAAAAGATTAAAGCAGCAAAGAACAAGTCATCGCAAGGCCGGTTGGAATCCTTTTTCAAGCCTGCAGTGAATCCATCTGCACCCATTAAACGGAAGGAAGCACCAGCGAATACTGCTAAGGAGACTAACAAAAAGGCCAAGGGAGGTAGTGGGAAGAGGAAGAAATAG 1182 0.423 MGIKGLTKLLADNAPKSMKEHKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRSIRLLEAGIKPVYVFDGKPPELKKQELAKRFSKRADADEDLSEAKETGTKEDIEKFSKRTVKVTKQHNEDCKRLLRLMGVPVVEAPSEAEAQCAALCKSGKASGYVYLAYMNVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEVAKILDELNLTMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGSIENILENINKERYQIPDDWPYKEARQLFKEPLVLTEEEQLDLKWTSPDEDGLLTFLVNENGFNADRVTKAIEKIKAAKNKSSQGRLESFFKPAVNPSAPIKRKEAPANTAKETNKKAKGGSGKRKK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0081 393 CDD PIN_FEN1 4 343 - -
Lele08g0081 393 Hamap Flap endonuclease 1 [fen]. 1 358 IPR023426 GO:0016788
Lele08g0081 393 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518
Lele08g0081 393 Gene3D - 230 297 - -
Lele08g0081 393 FunFam Flap endonuclease 1 230 297 - -
Lele08g0081 393 SUPERFAMILY PIN domain-like 2 245 IPR029060 -
Lele08g0081 393 SMART 53exo3 29 310 IPR002421 GO:0003677
Lele08g0081 393 CDD H3TH_FEN1-Euk 233 301 - -
Lele08g0081 393 Pfam XPG I-region 150 245 IPR006086 GO:0004518
Lele08g0081 393 SMART xpgn3 1 108 IPR006085 GO:0004518
Lele08g0081 393 MobiDBLite consensus disorder prediction 347 393 - -
Lele08g0081 393 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 230 360 IPR036279 -
Lele08g0081 393 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 384 IPR006084 -
Lele08g0081 393 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Lele08g0081 393 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Lele08g0081 393 SMART HhH_4 232 265 IPR008918 GO:0003677|GO:0003824
Lele08g0081 393 FunFam Flap endonuclease 1 10 233 - -
Lele08g0081 393 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Lele08g0081 393 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Lele08g0081 393 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 235 250 IPR006084 -
Lele08g0081 393 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Lele08g0081 393 SMART xpgineu 147 230 IPR006086 GO:0004518
Lele08g0081 393 Gene3D - 2 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0081 Lele-ChrLele08 477655 481726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0081 1 370 Core DNA Replication Machinery Family AT5G26680 84.865 0.0 654