Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0076 ATGCTGCCTGAAAGGGGAAGCAGAGGTTATAAGGTTGTGGTGGCAGTGGGAGATGATTCGGTGGAGAGAGCAGGAGGACACCTCACAGTCACAGGTGGTGCTACAGCTAAAGACGGCTACCCCTATAGAGTGAAAGATAGAACTTCTGGTCAGGACCAGCGCGAGGCTCTCCAAGTCGCGTGTTCTCCAGTGCTTCCGAGACCGGAGAATGACTTTTTTGAGCTGGTTTGGGAAAATGGTCAGATTTCGATGCAGGATAATGCAAATAAGAATTTGAAGCGAAAAAGTCAAGATACTGAGGACTCTGAGTGTCAAAGTGAACAAGAACATTTTTACTTGCAGGAAGTTGAGGAAGAATCAGTGGGCATTAAAAAGGCAGCTCCTGCACGAGGTACAAGTTCTAAGAGAAGTCGTGCAGCTGAAGTGCATAATCTATCCGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGCGCATTACAAGAACTCATCCCAAATTGCAATAAGGTGGATAAAGCATCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAACTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATGCGCCTCCACATCCTATGATGTTACACCCAGGAATGCATCACATGCAGACACCACATATGGCTTCATTCTCACCCATAGGAATTGGCATGCAAATGGGTTATGGGTTGAGCATGTCTGACATGAATAGTGGATCCCCTAAATTCCCAATGGTTCAGGTGCCCCATATGCAAGGAACTCATTTCCCTGTTTTACCTATGCCTGGAACCACTGCTGCTTTACATGGGATGCCAAGATCAAGTCCTCAAGCATTTGGGTTTCCTGTTCGCGGGCATTACATGCCAATGCCAAATGCTCCTGGAGTTTCTATGCCAGGAGGGCCCCTAATGAACCCTTCGACTTCAGGACAAAATGCCTTTGGAGCTGCAGGACTTGGGGAAACTGTGGTTTCGGCTTCAGCCTCTAGTTTAAAGGATCCAAGGCCAATTGTGAATTCACAAGTTATGCCAAGCACAGGTGGGAGTAACTCCACAGTCCAGATGTCTACTCAGTGTGAAGGAACGAATGTTGGAATTGATCAGACAGCACTAGTGCATTCTAGCGGGCATACCTCCAATATTAATGACAGCGGAGCCACTAATCCTGGCAAAGAAGATAACCCTGTGATTGGTAAATCTCGTAATGACTGA 1230 0.4634 MLPERGSRGYKVVVAVGDDSVERAGGHLTVTGGATAKDGYPYRVKDRTSGQDQREALQVACSPVLPRPENDFFELVWENGQISMQDNANKNLKRKSQDTEDSECQSEQEHFYLQEVEEESVGIKKAAPARGTSSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYAPPHPMMLHPGMHHMQTPHMASFSPIGIGMQMGYGLSMSDMNSGSPKFPMVQVPHMQGTHFPVLPMPGTTAALHGMPRSSPQAFGFPVRGHYMPMPNAPGVSMPGGPLMNPSTSGQNAFGAAGLGETVVSASASSLKDPRPIVNSQVMPSTGGSNSTVQMSTQCEGTNVGIDQTALVHSSGHTSNINDSGATNPGKEDNPVIGKSRND 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0076 409 MobiDBLite consensus disorder prediction 334 359 - -
Lele08g0076 409 MobiDBLite consensus disorder prediction 378 409 - -
Lele08g0076 409 Pfam Helix-loop-helix DNA-binding domain 142 188 IPR011598 GO:0046983
Lele08g0076 409 FunFam Basic helix-loop-helix transcription factor 133 196 - -
Lele08g0076 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 201 IPR036638 GO:0046983
Lele08g0076 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
Lele08g0076 409 MobiDBLite consensus disorder prediction 122 147 - -
Lele08g0076 409 Gene3D - 133 196 IPR036638 GO:0046983
Lele08g0076 409 CDD bHLH_AtPIF_like 138 200 - -
Lele08g0076 409 PANTHER TRANSCRIPTION FACTOR PIF3 87 362 IPR044273 GO:0003700|GO:0006355
Lele08g0076 409 SMART finulus 144 193 IPR011598 GO:0046983
Lele08g0076 409 MobiDBLite consensus disorder prediction 378 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0076 Lele-ChrLele08 440369 448140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0076 92 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 70.635 1.33e-46 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele08g0076 HLH 3e-14 No_clan