Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0072 ATGGCTAGAAACAGAGGGTCTCTTGCATATCTCTCCGACAACACTGCAAGGAAAACAACATATAAGAAAAGGAAGAAGGGTCTTTTCAAAAAGGTGAATGAACTAGCCACTCTCTGTGGGATCCAGGCGTGCGCTGTTGTTCTCAGCTCCTATGAAACTAAACCAGAGGTCTGGCCGGATCCAAGAGGAGCTCAACAGGTAATCGCAAGGTTCCAGAAGACACTTGGGCGGGATGAAACAAGGAATCTGAACCAGGAGAGTTTTACTAGGCAAAGGATTGCCAAAGTTGGTGCCCATATAAAAAAGCAGCGTGTAGAAATCAAAAGAAGGCCCAATAAACTCGTGCCTGCCTCAGCTCAAGTGGATGTGAGCCAAATTGCGTTACGTGTAAATTCTGTTTATGGGCCTATCCTATCGGGCTTTAACTTTGTCATGGCCGAATGGGCAAGAGCAAACAGAGCAACCCATCTAAAAATGGGCCGGATCAATAGAGCTCATTTGTCATTCCAAGAGTTCTGGAAAGACAGGACAGAGAAGGAATCTGGCAAGACTGCTGGCTCTGTACATGTTAATGAAGAAGATTTCTCAATTGTTAACGTGGGAGGCTACATGCAACATGCTATGTTTTGA 630 0.4524 MARNRGSLAYLSDNTARKTTYKKRKKGLFKKVNELATLCGIQACAVVLSSYETKPEVWPDPRGAQQVIARFQKTLGRDETRNLNQESFTRQRIAKVGAHIKKQRVEIKRRPNKLVPASAQVDVSQIALRVNSVYGPILSGFNFVMAEWARANRATHLKMGRINRAHLSFQEFWKDRTEKESGKTAGSVHVNEEDFSIVNVGGYMQHAMF 209
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0072 209 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Lele08g0072 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele08g0072 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 50 IPR002100 GO:0003677|GO:0046983
Lele08g0072 209 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Lele08g0072 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele08g0072 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele08g0072 209 PANTHER MADS BOX PROTEIN 11 100 - -
Lele08g0072 209 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele08g0072 Lele-ChrLele08 420812 423838 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0072 3 106 Type I MADS-box Gene Family AT1G65330 43.810 3.74e-25 97.4
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele08g0072 SRF-TF 5.2e-16 No_clan