Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0034 ATGGATCATGTTTACAGGTTAAACACTAAGGAATCATGCCTTTCGGAAGATGTCAGAGTTGGTGACGTCTCTTCTTCTTCAGATCAGTTGCATCGAGCTCCGGTGGCTAATAACTACGTACAGCTGCAAGTGCCTGATTCGGAAAGAACCTACTCTGATGTGCCGGCCGACCAGTTCATCAAGACCCAAATCGCCAATCACCCTCTTTATCCTGATTTATTATCTGCTTACGTTGAATGCCAAAAGGTCGGAGCTCCACCAGAACTGGCGTCGCTTCTGGAAGAAATGAACCGTGAAAATCACCCCATCGCCGCTCAGCGTCAGATAGGGGACGATCCTCAACTTGACGATTTCATGGAATCATACTGCGATGTTCTTCGAAGATACAAAGAGGAGTTGTCGAGGCCCTTCAACGAAGCGACCTTGTTTTTGAGCAACATCGAATCCCAGCTCCACAACCTTTGCAAGGGAACATTAATAAATTCAACGGGATGTCGATCCGAGGAGGAAGGTGTGACTTCAGAAGAGGAACTAAGTTGTGGAAAGGTGGAAGCTGTTGAAGGTGGAGGATATTATGGCAGTTGCCAAGCTGATAAAGAGATCAAAGAAATGCTTCTTCGTAAGTACAGTGGCTATCTCAGCAATATGCGGAAGGAGTTCTTGAAGAAAAGGAAAAGTGCTAAGCTTCCAAAAGATGCGAGGATGACACTGCTCAATTGGTGGAACACCCACTACAGATGGCCTTATCCCACGGAGGAGGAGAAATTGAGGCTATCGGAAACGAGTGGACTGAATCAAAAGCAGATAAATAATTGGTTCATCAATCAGAGGAAACGGCACTGGAAGCCATCTGATGATATGCGATTTGCCGTCTTGGAGGGTGTAAGTGTGGCCCCCTTTGGACCCCCCTTCTGCTTCAATGGTTCTCCTCCACCGCCACCTCAACCTCATTGA 954 0.4706 MDHVYRLNTKESCLSEDVRVGDVSSSSDQLHRAPVANNYVQLQVPDSERTYSDVPADQFIKTQIANHPLYPDLLSAYVECQKVGAPPELASLLEEMNRENHPIAAQRQIGDDPQLDDFMESYCDVLRRYKEELSRPFNEATLFLSNIESQLHNLCKGTLINSTGCRSEEEGVTSEEELSCGKVEAVEGGGYYGSCQADKEIKEMLLRKYSGYLSNMRKEFLKKRKSAKLPKDARMTLLNWWNTHYRWPYPTEEEKLRLSETSGLNQKQINNWFINQRKRHWKPSDDMRFAVLEGVSVAPFGPPFCFNGSPPPPPQPH 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0034 317 SMART ELK_2 200 221 IPR005539 GO:0003677
Lele08g0034 317 SMART HOX_1 222 287 IPR001356 GO:0003677
Lele08g0034 317 CDD homeodomain 223 284 IPR001356 GO:0003677
Lele08g0034 317 Gene3D - 218 290 - -
Lele08g0034 317 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Lele08g0034 317 ProSiteProfiles ELK domain profile. 200 220 IPR005539 GO:0003677
Lele08g0034 317 SUPERFAMILY Homeodomain-like 222 290 IPR009057 -
Lele08g0034 317 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Lele08g0034 317 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 49 289 - -
Lele08g0034 317 ProSitePatterns 'Homeobox' domain signature. 258 281 IPR017970 GO:0000981|GO:0006355
Lele08g0034 317 ProSiteProfiles 'Homeobox' domain profile. 220 283 IPR001356 GO:0003677
Lele08g0034 317 Pfam KNOX2 domain 108 155 IPR005541 GO:0003677|GO:0005634
Lele08g0034 317 Pfam ELK domain 200 221 IPR005539 GO:0003677
Lele08g0034 317 Pfam Homeobox KN domain 240 279 IPR008422 GO:0003677|GO:0006355
Lele08g0034 317 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0034 Lele-ChrLele08 197708 200630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0034 19 300 Homeobox Transcription Factor Family AT1G23380 48.611 9.01e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele08g0034 KNOX2 7e-24 No_clan