Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0019 ATGGCTATTTTGTGCATAAAATTAAAACCAAAAGCCAAAACCCCAGTGTCCGAAAGGAACATTTCCTTGATATTGCAAAATAAATTCATCTTTTCCGGTGATCTTGTTCCTCCTCTCGCAGATTCCCACTTCAACTCTATATTGTCCCAGATGGTAAAGGGGGGAAAGGTTGGTGGCAAACGCAATTTCAGAAAAAGGGTTCGGTCAAAGGAAGGGGGTTCTGATGATTCGGATGAGGACTATGTGGTTCCGGATGAAGATAGAGATTTGTCTGATTGTTCGGAAGATTCATTGTCTTCTTTAGATGGATGTGCATCCGAGGAGAGTTTTGATAACTTTGTAGGGGATGAGGAGGAGGAAGTTGAAGTAAGGAGGCAATTTAATAGACCCAAGACAAAAACTGGCATTTGTGGCCGGCAGAAAATTGGCAGGAAACCCTCACAACAGATAGGAAGGATAACTTATTCACATCAACGAGAAGAAGATAAAGAAGAAGAACTAGAACAAGAAGACAGAGAAGAAGAAGAACGAGAACGAGAAGAGGAATATGATGAAGATACAGATGAATATGAGGAAGATGATGCTGATGAAGATTTCGATTGTGATGAGGATGAGGAATTTACAGCCGAGGAAGAGGATTACTCAGATGAGGAAGAAATAAAGGGGAGAAAGAAGAAAAGTAATGGGATAAAAATGGGCAAGAAGGTTGCTCAGAAGCGGGCCTCTGTAACTTATACTAGAGGTCGTAAAAGAAGAAAGAATTCTAGAGCTGCAAGGAAGCCCTTGAAAAAGAGGAGAAGAAAGAATGGAGGGTTGAGGAGGAAAGCAAAGTATGATGATGAGGGTGATTTTATAGATAACGGTCCTACCATCAGAACCAAGAGTACAAAAAAACCAGGACAAAAAAGGAGAAGACTAATAGTTGATTCAGATTCATTCTCAGATTGTGTGTCATCTAGATCATCTGATTATGAGTATACCATCTCTGAAGAAGAGAGAGAACTGGTGAGGGAAGCTGAGGAATTGTGTGGATTGAGAACTAATTTGAGGAGTTCATCCCTTCTAACAAAACATGAAGAGGATGGATTCCATGAAGATCCACATCAGCAAAGAAAGCCTCCAGCCCGCAAAGGTAAGGAAAAGCTAGAGGAACATCAGGGGAGAAAGGGCAAGGACAAGGTAGAGGATTTAAAAAGTGAACCAGGAAAGCAGGTGTGTGGAATTTGTCTCTCTGAAGAAGATAAAAGAAGAGTAAGAGGAGTACTAGATTGTTGTACACACTTTTTTTGTTTTGCTTGCATTATGGAATGGGCAAAAGTGGAATCTCGCTGCCCTTTGTGCAAGCAGAGATTTAGAGCAATCAGTAAGCCTGCACGATCAACAACAGCGGGGGTTGATTTGAGAGGATCAGTTATACAAGTCCCCGAACGTGATCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAGTATGTAATTTGTTCAGAGTGCCATCAGGGTGGAGACGATGACCTCATGTTACTGTGTGATCTCTGTGACTCTCCTGCACACACATATTGTGTTGGTCTGGGTCGGGAGGTACCTGAAGGCAATTGGTATTGTGATGGTTGTAGGCCAGTTGCTTTGGGATCTTCAAGTTCTCAAATTCAGGAAGGTGTGGCTGATTCAAGGGCAACAACAGTTCAGAGCCTACCTGGTAGACCATCGCCTGCTGTACATGCAAGAGAAATTATTGACCTCAACTTGATGTCCTCACCGAGTGCAGCTTTTAGTCAAGGGTTGGGGAATTTTTCTTCTAGATTTTCTGGTAGAAGTGTTGAAGGAGCTTCTCCAGTGTCTGGAGGAGGGGCACCAACTTTATCTGAGAGACGTTGGATACACCGTCAAATTCAACAATTACTTTCAATGGATAGAATGACTTCTGCTGCTGGTCGATCTAATGGCATTTCAGCTACCAATTCAACTAGTAACCTATGTGGCTCTCAAAATGATCAAAGTAGGGTAACAACCACTCAAGACACAAGAATACAGAATGTGGGAACATCGTCATATCACTCATTTTTTGAGGAAAGATTATGCAACAGTTCGTCTCCACTAATGCAGAATGGGGATCATTTCTCTATGAGAATAAGCAATTCAAGAAGGCCAGTAGTTCAAGATTCAACTCCATTTACCAACAGAGCTGTGATTGGGGCATTTTGGCCTGGTCTTGTGGGGACGCCTCCTGTATCAGATTATGAACAAGTCCATCAGCTTAGCAGCAGTTCACACATTGTTGCTGATGGTACCGTGTCCCCTGCTATTAGAGAAGAGAGTAACTTTCACATAGTAAAGGAACAATTGTCATCACTGGTTAAACGCCATCTCATGGACTTGTCACAAAATATTGATTTAGGCAACAGTACCATCAAGGACATTGCAAGGATTTCTCTGAACACCATACTAGCAGCTTGTGGTCTTGAGCACAAGAAGAGCGAGGTTTGCGCTGTGCCCCCTCCTTCAGCCTGTCCCCACATTGAACTGATGGCTGGTGGGCAAACGAGTCTGATTAAAGGTTGCTGCTCATCTTGCTTTGATTCTTTTGTAGGAGACGTGGTTAAGAGGATCATGGACACTAGAATGCCGCAGTGGTTGCGACTAGGCCTTTAG 2667 0.4286 MAILCIKLKPKAKTPVSERNISLILQNKFIFSGDLVPPLADSHFNSILSQMVKGGKVGGKRNFRKRVRSKEGGSDDSDEDYVVPDEDRDLSDCSEDSLSSLDGCASEESFDNFVGDEEEEVEVRRQFNRPKTKTGICGRQKIGRKPSQQIGRITYSHQREEDKEEELEQEDREEEEREREEEYDEDTDEYEEDDADEDFDCDEDEEFTAEEEDYSDEEEIKGRKKKSNGIKMGKKVAQKRASVTYTRGRKRRKNSRAARKPLKKRRRKNGGLRRKAKYDDEGDFIDNGPTIRTKSTKKPGQKRRRLIVDSDSFSDCVSSRSSDYEYTISEEERELVREAEELCGLRTNLRSSSLLTKHEEDGFHEDPHQQRKPPARKGKEKLEEHQGRKGKDKVEDLKSEPGKQVCGICLSEEDKRRVRGVLDCCTHFFCFACIMEWAKVESRCPLCKQRFRAISKPARSTTAGVDLRGSVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDDLMLLCDLCDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQIQEGVADSRATTVQSLPGRPSPAVHAREIIDLNLMSSPSAAFSQGLGNFSSRFSGRSVEGASPVSGGGAPTLSERRWIHRQIQQLLSMDRMTSAAGRSNGISATNSTSNLCGSQNDQSRVTTTQDTRIQNVGTSSYHSFFEERLCNSSSPLMQNGDHFSMRISNSRRPVVQDSTPFTNRAVIGAFWPGLVGTPPVSDYEQVHQLSSSSHIVADGTVSPAIREESNFHIVKEQLSSLVKRHLMDLSQNIDLGNSTIKDIARISLNTILAACGLEHKKSEVCAVPPPSACPHIELMAGGQTSLIKGCCSSCFDSFVGDVVKRIMDTRMPQWLRLGL 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0019 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 466 IPR013083 -
Lele08g0019 888 Coils Coil 157 193 - -
Lele08g0019 888 CDD RING-HC_Topors 406 448 - -
Lele08g0019 888 MobiDBLite consensus disorder prediction 244 272 - -
Lele08g0019 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 547 IPR013083 -
Lele08g0019 888 MobiDBLite consensus disorder prediction 63 105 - -
Lele08g0019 888 SMART PHD_3 499 544 IPR001965 -
Lele08g0019 888 Pfam Ring finger domain 405 448 IPR001841 -
Lele08g0019 888 SMART ring_2 406 447 IPR001841 -
Lele08g0019 888 Pfam PHD-finger 499 545 IPR019787 -
Lele08g0019 888 MobiDBLite consensus disorder prediction 655 677 - -
Lele08g0019 888 MobiDBLite consensus disorder prediction 78 92 - -
Lele08g0019 888 SUPERFAMILY FYVE/PHD zinc finger 469 545 IPR011011 -
Lele08g0019 888 MobiDBLite consensus disorder prediction 360 396 - -
Lele08g0019 888 MobiDBLite consensus disorder prediction 132 322 - -
Lele08g0019 888 ProSitePatterns Zinc finger RING-type signature. 425 434 IPR017907 -
Lele08g0019 888 MobiDBLite consensus disorder prediction 273 287 - -
Lele08g0019 888 ProSiteProfiles Zinc finger RING-type profile. 406 448 IPR001841 -
Lele08g0019 888 ProSiteProfiles Zinc finger PHD-type profile. 497 546 IPR019787 -
Lele08g0019 888 SUPERFAMILY RING/U-box 405 453 - -
Lele08g0019 888 MobiDBLite consensus disorder prediction 164 216 - -
Lele08g0019 888 PANTHER F18C1.6 PROTEIN 51 878 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0019 Lele-ChrLele08 106338 110142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0019 494 543 C2H2 Transcription Factor Family AT3G01460 48.077 5.66e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele08g0019 PHD 5.9e-09 CL0390