LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele08g0018	ATGTCAACAGAACAGGAATTGACATTCTCGGTGTTATCTGTCGTTGAAGATGTTCTTCAACAGCATGGGACCCGATTGGGTGATACCAACTCGACGTCAAGGAAACTAGAACCATCTTGCTTAAGAAGGTATGAAGCAGCTGGGTGGCTAAGGAAGGCAAATGGAGTAATTGGAGGGAAAGAGTTTCCTGTTGAACCTTCTGAAGAAGAATTCAGGACTGGTTTGCGTAGTGGCATAATCCTTTGCAATGTTCTTAACAAAATTCAACCTGGAGTGGTGCCCAAGGTAATTGAAGGTCCCTGCGATTCCGATGATGGAGCCGCGGCACTATCTGCATTTCAATACTTTGAAAATGTGATGAACTGTCTTGTAGCTTTGCAAGAAATGGGGCTTCCTACCTTTCAAGCTTCTGATTTGGAGCAGGGAGGGAAATCAGCGAGGTTAGTGGATTGTGTTTTGGCAATCAAGGCATATAGTGAATGGAAAGAGGGAGGAAAAATGGGGTCATGGAAACATGGTGGGAATATAAAGTCACTCGTTTCCGGAAGACCATTTTTGCGCAAAAACTCAGAACAAATCCTCTCCAGTTCAACGAGGGCCCCGAGTTGTGGAATGGAAGAAAATGAAGACATGCAGCCTGAGCAAGAGGAGTGTTATAATAAAGAGCACTGTGTCGATGAAGAATCAAGACTCCAAGTTCTGAACGAGCAGCAAAAGTTGGTTTCCCAACAATACAAAGAAATCCCCATTAGCGATGAAGTATCAAGAATCCACGTTTCGAAGAACCAGCAAAAGTTGCTAGCACAACAAAATAAAGAGATCCAGCCCAAGGTTGATCTTCGTCTAACTAATCATCATAACAATCATTTGCTACCTTCCGGACCAAATGATCTTACTGAGGAAACCGTGGGAGTCAACTATAGGGCACTAAGAGATCTTTTTCTGCTGTCACAGCAGAGGAAAGATACTGTTGCCTATGACATCGGTGTTCAGATGCTTGAGATCTACAATGACCAAGTCAGAGATCTTCTAGCGACAGATGAAATTCGCAACAGTTCTCAAAATGGCGTTAATGTACCAGATGCAACCCTGGTTCCTGTTTCATCGACTTCCGATGTCTTAAGTTTGATGAACCTGGGACATAAAAATCGGGCAGTTAGTGCTACTGCGATGAATGATCGGAGTAGTCGTTCTCATAGTTGCCTGACAGTTCATGTTCAAGGAAGGGACCTGACATCAGGAAGCCATCTTCGTGGCAGTATGCATCTAGTTGACCTGGCAGGAAGTGAGAGGGTCGATAAATCTGAGGTCACAGGTGATAGGCTTAAGGAGGCTCAACATATCAACAAGTCACTTGCTGCCTTAGGAGATGTCATTTCTTCGCTGGCTCATAAGCAAGCGCATGTTCCTTATAGGAACAGTAGACTTACTCAACTGCTTCAAGATTCTCTTGGAGGGCAAGCCAAGACACTCATGTTTGTACATATTAGTCCAGAACCTGATGCTCTTGTAGAAACACTCAGCACACTCAAGTTTGCAGAACGCGTCTCCACAGTTGAACTTGGTGCTGCCCGAGCTAACAAAGAGAGTTCAGAAGTGAAAGAGCTTAAAGAGCAGATTGCTAATTTGAAGGCAGCTTTGGCAAGAAAGGAGGGAGAAGATGAACCACTTCAACATTCTGTAAACAGTAGTCTAGATGCACCGAAATTGAAATCTTACAAGTCTTCTCCTACACATTCCGGAGGTCAGAGGAAACCCCAAGATGGTTCTAGCAGCGTGGAGAGCCAGAAGAGGGCGACAACGAAGCTGAAAAGACGAAGCTTAGATCTCCAAGACATGATAATGCATTCACCTCCCTGGCCACCTTCAAGCAGTCAGAGGATGAACAGTAAGCAAGAGCATAAAGGATCAATTTCCGGGGACTGGGTTGATAAGATCGTGGTGAACAGGACTGACGATAGCTTAACAAGTGATGATAGCCTAGTGGGTCAGTGGGAAGCAGAAAGCAAACAGTCTTCTCCCTTGTTGAGTCCCGGCTCTCTCTCAGACGCTTCAAAAGTATGCTCGGAACATTCCTTTAAATTTACATCGAATAAAAAGGATAGCCAAGACTATGACATGGCCACCACAGATGACTCTGATGATCCGCTTGAGGTTGCGACTAGCGATTCCTCAGAATCAGACGTGCATTGGCAATTGCATATGCCGAAACCAACCAGCAAAATCAATGGAATAGTTTCTAAAGTTAGGAAACCCACCACCCATCACAAAATAGTAAAGAACGTAGAGCCCAGGAGCATGATTCCGTCTTTGATCCCTGCGCCATCAAGGAAACAATTGGTGAGTCAATCCAGAAAGCAGGCAAGTCCTAATGATGGAAAAAGAACTGGGAATGCAAAAATTGGAGGGTTAACATGTATGATATGGCCAATACGCAATGTTGAATCATCCGCCTCGATCTACTGCATTTTTCACTTTTCCGTTGGTTTGTGGATATGCATGTCGTAA	2508	0.4446	MSTEQELTFSVLSVVEDVLQQHGTRLGDTNSTSRKLEPSCLRRYEAAGWLRKANGVIGGKEFPVEPSEEEFRTGLRSGIILCNVLNKIQPGVVPKVIEGPCDSDDGAAALSAFQYFENVMNCLVALQEMGLPTFQASDLEQGGKSARLVDCVLAIKAYSEWKEGGKMGSWKHGGNIKSLVSGRPFLRKNSEQILSSSTRAPSCGMEENEDMQPEQEECYNKEHCVDEESRLQVLNEQQKLVSQQYKEIPISDEVSRIHVSKNQQKLLAQQNKEIQPKVDLRLTNHHNNHLLPSGPNDLTEETVGVNYRALRDLFLLSQQRKDTVAYDIGVQMLEIYNDQVRDLLATDEIRNSSQNGVNVPDATLVPVSSTSDVLSLMNLGHKNRAVSATAMNDRSSRSHSCLTVHVQGRDLTSGSHLRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLAALGDVISSLAHKQAHVPYRNSRLTQLLQDSLGGQAKTLMFVHISPEPDALVETLSTLKFAERVSTVELGAARANKESSEVKELKEQIANLKAALARKEGEDEPLQHSVNSSLDAPKLKSYKSSPTHSGGQRKPQDGSSSVESQKRATTKLKRRSLDLQDMIMHSPPWPPSSSQRMNSKQEHKGSISGDWVDKIVVNRTDDSLTSDDSLVGQWEAESKQSSPLLSPGSLSDASKVCSEHSFKFTSNKKDSQDYDMATTDDSDDPLEVATSDSSESDVHWQLHMPKPTSKINGIVSKVRKPTTHHKIVKNVEPRSMIPSLIPAPSRKQLVSQSRKQASPNDGKRTGNAKIGGLTCMIWPIRNVESSASIYCIFHFSVGLWICMS	835

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lele08g0018	835	MobiDBLite	consensus disorder prediction	618	636	-	-
Lele08g0018	835	Gene3D	Kinesin motor domain	285	560	IPR036961	-
Lele08g0018	835	MobiDBLite	consensus disorder prediction	776	797	-	-
Lele08g0018	835	ProSiteProfiles	Kinesin motor domain profile.	293	519	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Lele08g0018	835	ProSiteProfiles	Calponin homology (CH) domain profile.	40	160	IPR001715	GO:0005515
Lele08g0018	835	SMART	ch_5	42	158	IPR001715	GO:0005515
Lele08g0018	835	SUPERFAMILY	Calponin-homology domain, CH-domain	46	171	IPR036872	-
Lele08g0018	835	Pfam	Kinesin motor domain	300	518	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Lele08g0018	835	SMART	kinesin_4	173	527	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Lele08g0018	835	MobiDBLite	consensus disorder prediction	696	729	-	-
Lele08g0018	835	MobiDBLite	consensus disorder prediction	776	794	-	-
Lele08g0018	835	Pfam	Calponin homology (CH) domain	46	159	IPR001715	GO:0005515
Lele08g0018	835	MobiDBLite	consensus disorder prediction	558	597	-	-
Lele08g0018	835	Coils	Coil	526	553	-	-
Lele08g0018	835	FunFam	Kinesin-related protein3	356	561	-	-
Lele08g0018	835	MobiDBLite	consensus disorder prediction	550	641	-	-
Lele08g0018	835	ProSitePatterns	Kinesin motor domain signature.	419	430	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
Lele08g0018	835	PANTHER	KINESIN-LIKE PROTEIN KLP-3	47	267	-	-
Lele08g0018	835	PRINTS	Kinesin heavy chain signature	420	438	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Lele08g0018	835	PRINTS	Kinesin heavy chain signature	469	490	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Lele08g0018	835	PRINTS	Kinesin heavy chain signature	389	406	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Lele08g0018	835	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	299	551	IPR027417	-
Lele08g0018	835	Gene3D	-	34	160	IPR036872	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele08g0018	Lele-ChrLele08	92495	101566	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele08g0018	304	557	Calmodulin-binding Proteins	AT5G65930	42.146	1.29e-48	185