Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0013 ATGTCATCTTTGAGCAGAGAATTGGTGTTTCTCATTCTCCAATTTCTGGAGGAGGAGAAGTTTAAAGAGTCAGTGCACAAGCTTGAGAAGGAGTCTGGGTTTTTCTTCAATATGAAGTACTTTGAGGAAAAAGTCCAGGCTGGAGAATGGGAAGAAGTTGAGAAGTACTTGACAGGGTTTACTAAAGTTGATGATAATCGATACTCCATGAAGATTTTCTTTGAAATCAGAAAACAAAAATATCTGGAAGCGCTCGATAGGCAAGACAAGGCAAAGGCTGTTGAGATACTAGTAGGTGATTTGAAAGTGTTCTCCACTTTCAATGAGGATCTATATAAAGAAATTACCCAGCTTTTAACTCTTAATAATTTCAGGGAGAATGATCAGCTGGCCAAATATGGCGACACTAAAACAGCTCGAAGCATTATGTTGATAGAGCTGAAAAAATTGATAGAAGCAAATCCTCTATTTCGTGATAAGCTTCTCTTCCCTACTCTTAAATCGTCGAGATTAAGGACGTTAATCAATCAAAGCTTGAACTGGCAGCATCAGCTTTGCAAAAATCCAAGGCCAAACCCAGATATTAAGACTTTATTTACAGATCACACATGTTCACCTCCTAATGGTCCTCTAGCACCCACACCCGTCAATCTTCCAGTTGCGGCAGTAGCAAAGCCTGCTGTTTATACGTCACTTGGTGCTCATGGTTCCTTCCCACCTGCTGCAGCTTCTGCTAATTCCATAGCTGGTTGGATGGCAAATGCCTCTGCTTCATCATCTGTCCAAGCAGCAGTTGTCACGGCATCATCCATGCCTGTTGCTCAGAATCAAGTGCCCATCTTGAAACGTCCAAGAACACCTCTGGCAGCCCCTGGCATGGTTGATTATCAGAATTCTGATCATGAGCAGTTAATGAAAAGGCTTCGACCTGTTCATTCTGTAGAGGAGGTTTCTTATCCTACAGCTCGACAAGCTTCTTGGTCACTGGATGATCTGCCAAGAACAGTGGCTATGACTCTGCATCAAGGATCCTCTGTTAACAGCATGGACTTTCACCCTTCAAACCAGACATTACTTCTTGTTGGTTCTACTAATGGTGAAATTGCCCTATGGGAACTTGGGTTACGGGAGAGGTTGGTTTCAAAACCATTCAAGATATGGGATCTATCAGCATGCTCATTGCCATTTCAGGCAGCTGTCGTCAAAGATGTGCCAATTTCTGTCAGCCGTGTTATGTGGAGCCCGGATGGAAATTTTGTTGGTGTTGCATTTAGCAAACATTTGGTTCACTTGTATGCCTATACTGGGTCAAATGAGCTGAGCCAACGATTGGAGATTGATGCCCATACTGGTGGCGTGAATGACTTGGCATTTGCTCATCCAAATAAACAACTATGTATTCTGACCTGTGGTGATGATAAGATGATAAAGGTGTGGGAGTTAAATGGACGAAAACTATTCAACTTTGAGGGGCATGAAGCACCTGTCTATTCCATCTGTCCTCATCACAAAGAGAACATTCAGTTTATATTTTCAACTGCCGTTGATGGAAAAATAAAGGCCTGGTTGTATGATAATATGGGTTCCAGAGTTGACTATGATGCTCCGGGTCACTGCTGTACCACAATGCTTTACAGTGCTGATGGGAGTAGATTGTTTTCTAGTGGAACAAGTAAAAATGGAGAATCTTTCTTAGTTGAATGGAATGAAAGTGAAGGAACCATTAAGAGGACGTATAATGGGTTCAGAAAGAAATCGAATGGTGTTGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGCTGCAGGTGAAGACAGCCAAATAAAGTTCTGGGATATGGACAATGTTAATCTTCTGACAAGCACTGATGCAGAGGGAGGACTACAGAGCCTTCCACGTTTGAGATTTAATAAGGAAGGAAATCTTCTTGCTGTTACTACTTCCGACAATGGATTCAAGGTCCTTGCAAATGCTACTGGTCTGAGATCCTTAAGGGCAATGGAAAATCCAGCATTTGAAGCATTGAGATCTCCCATAGAATCAGCTTCAAATAAGGTTTCTGGCTCCCCTGCTGTAAATGTCAGTCCTGTCAACTGTAAAGTAGAGAGGAGCTCGCCTGTCAGGCCATCTCCAATCCTCAACGGAGTTGACCATATGGGTCTAAGTTTGGAAAAACCTAGAACCATGGAAGATGTGATAGATAGAACTAAACCATGGCAGCTATCTGAAATTTCGGAAGCTATCCAATGTCGGTTAGTTACAATGCCTGAGAGTGCAGATGCTTCCAGCAAGGTTGTTCGACTTTTATATACAAATTCTGGTGCTGGTGTTTTGGCACTTGGATCAAATGGTATTCAGAAACTGTGGAAGTGGACTCGTAATGAACAGAATCCTACTGGGAAGGCCACTGCCAGTGTTGTTCCACAACATTGGCAACCCAACAGTGGTCTTCTTATGACCAATGATATTTCTGGTGTCAACCTTGAAGAAGCAGTTCCCTGCATTGCACTCTCAAAGAATGACTCTTACGTTATGTCCGCCTGTGGTGGAAAGGTTTCATTATTTAACATGATGACATTCAAGGTAATGACAACGTTCATGCCACCACCTCCTGCCTCTACTTTCCTGTCTTTCCACCCACAGGATAACAACATCATAGCCATTGGGATGGAGGATTCTACGATTCACATTTATAATGTTAGAGTGGATGAGGTAAAATCGAAATTGAAGGGTCATCAGAAGCGTATTACTGGTTTAGCCTTTTCAACCAGCCTTAACATACTGGTCTCATCTGGTGCTGATGCCCAACTTTGCGTGTGGAGCATTGATACATGGGAGAAAAGAAAATCAATGACAATACAACTACCGGAGGGGAAGTCTCCTGTTGGTGATACCAGAGTCCAGTTCCATTCTGATCAACTCCGCTTATTGGTAGTTCATGAGACTCATTTGGCAATATATGATGCTTCCAAGATGGATCGCATTCGACAGTGGCTTCCACAAGATACTCTGCCTGCTCCCATATCATATGCAACTTATTCAAGCAACAGTCTGTTAATATATGCTACCTTTTTTGATGGTAACATTGGGGTCTTTGGTGCTGATAGCTTGAGGCTAAGATGTCGTATTGCTCCATCAGCATACTTATCACAGGCAGCTTTAAGTGGAAGCCAAGCCGTGTACCCTGTCGTGGTTGCAGCTCATCCACAAGAGCCCAACCAATTCGCTGTTGGATTGACTGATGGATCTGTCAAAGTAATAGAGCCCTCTGAATCAGAGGGCAAATGGGGATCTACTCCACCTGTAGATAATGGAGTGCTAAACGGTAGGCAAGGGCAATCATCTACTTCAAATATGCACACTCCTGATCAGGCACAAAGATAA 3384 0.4291 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEDLYKEITQLLTLNNFRENDQLAKYGDTKTARSIMLIELKKLIEANPLFRDKLLFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPAVYTSLGAHGSFPPAAASANSIAGWMANASASSSVQAAVVTASSMPVAQNQVPILKRPRTPLAAPGMVDYQNSDHEQLMKRLRPVHSVEEVSYPTARQASWSLDDLPRTVAMTLHQGSSVNSMDFHPSNQTLLLVGSTNGEIALWELGLRERLVSKPFKIWDLSACSLPFQAAVVKDVPISVSRVMWSPDGNFVGVAFSKHLVHLYAYTGSNELSQRLEIDAHTGGVNDLAFAHPNKQLCILTCGDDKMIKVWELNGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGHCCTTMLYSADGSRLFSSGTSKNGESFLVEWNESEGTIKRTYNGFRKKSNGVVQFDTTQNRFLAAGEDSQIKFWDMDNVNLLTSTDAEGGLQSLPRLRFNKEGNLLAVTTSDNGFKVLANATGLRSLRAMENPAFEALRSPIESASNKVSGSPAVNVSPVNCKVERSSPVRPSPILNGVDHMGLSLEKPRTMEDVIDRTKPWQLSEISEAIQCRLVTMPESADASSKVVRLLYTNSGAGVLALGSNGIQKLWKWTRNEQNPTGKATASVVPQHWQPNSGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLSFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSMTIQLPEGKSPVGDTRVQFHSDQLRLLVVHETHLAIYDASKMDRIRQWLPQDTLPAPISYATYSSNSLLIYATFFDGNIGVFGADSLRLRCRIAPSAYLSQAALSGSQAVYPVVVAAHPQEPNQFAVGLTDGSVKVIEPSESEGKWGSTPPVDNGVLNGRQGQSSTSNMHTPDQAQR 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0013 1127 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 327 436 IPR011044 -
Lele08g0013 1127 Gene3D - 759 1100 IPR015943 GO:0005515
Lele08g0013 1127 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Lele08g0013 1127 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 909 944 - -
Lele08g0013 1127 FunFam Topless-related protein 3 728 962 - -
Lele08g0013 1127 ProSiteProfiles Trp-Asp (WD) repeats profile. 446 489 IPR001680 GO:0005515
Lele08g0013 1127 SMART Lish 4 36 IPR006594 GO:0005515
Lele08g0013 1127 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 395 946 IPR011047 -
Lele08g0013 1127 Pfam WD domain, G-beta repeat 446 479 IPR001680 GO:0005515
Lele08g0013 1127 Pfam WD domain, G-beta repeat 908 941 IPR001680 GO:0005515
Lele08g0013 1127 ProSiteProfiles Trp-Asp (WD) repeats profile. 590 621 IPR001680 GO:0005515
Lele08g0013 1127 MobiDBLite consensus disorder prediction 1088 1127 - -
Lele08g0013 1127 Gene3D - 296 531 IPR015943 GO:0005515
Lele08g0013 1127 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Lele08g0013 1127 SUPERFAMILY Peptidase/esterase 'gauge' domain 882 1107 - -
Lele08g0013 1127 ProSitePatterns Trp-Asp (WD) repeats signature. 467 481 IPR019775 -
Lele08g0013 1127 SMART WD40_4 997 1033 IPR001680 GO:0005515
Lele08g0013 1127 SMART WD40_4 859 899 IPR001680 GO:0005515
Lele08g0013 1127 SMART WD40_4 902 941 IPR001680 GO:0005515
Lele08g0013 1127 SMART WD40_4 397 433 IPR001680 GO:0005515
Lele08g0013 1127 SMART WD40_4 572 612 IPR001680 GO:0005515
Lele08g0013 1127 SMART WD40_4 526 569 IPR001680 GO:0005515
Lele08g0013 1127 SMART WD40_4 333 372 IPR001680 GO:0005515
Lele08g0013 1127 SMART WD40_4 1047 1088 IPR001680 GO:0005515
Lele08g0013 1127 SMART WD40_4 820 856 IPR001680 GO:0005515
Lele08g0013 1127 SMART WD40_4 482 523 IPR001680 GO:0005515
Lele08g0013 1127 SMART WD40_4 437 480 IPR001680 GO:0005515
Lele08g0013 1127 MobiDBLite consensus disorder prediction 1104 1127 - -
Lele08g0013 1127 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1109 IPR027728 GO:0006355
Lele08g0013 1127 ProSiteProfiles Trp-Asp (WD) repeats profile. 909 950 IPR001680 GO:0005515
Lele08g0013 1127 SMART ctlh 34 92 IPR006595 -
Lele08g0013 1127 Gene3D - 558 672 IPR015943 GO:0005515
Lele08g0013 1127 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 381 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0013 Lele-ChrLele08 68697 78267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0013 445 653 Miscellaneous Gene Families AT5G08390 25.822 3.32e-07 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2248 13 28668746 28670362 Lele08g0013 08 68697 78267 CCT
Lele14g2182 14 27025097 27027502 Lele08g0013 08 68697 78267 CCT
Lele15g0164 15 1007329 1008940 Lele08g0013 08 68697 78267 CCT
Lele16g0173 16 1022836 1025853 Lele08g0013 08 68697 78267 CCT
Lele08g0013 08 68697 78267 Lele08g0013 08 68697 78267 ECH
Lele05g0205 05 1102208 1111879 Lele08g0013 08 68697 78267 hybridization
Lele06g0012 06 72926 82490 Lele08g0013 08 68697 78267 hybridization