Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2832 ATGGCCGACCTATTCTTTTCCAATAACTTGCAGTTTCCTTTCATTCCTTCTTCCAAACAATTTTCAATTTCAATTCGGCACTGTTGTGTACGAGCACAGCTCCTCTCCCCTCACTCTATGTCTGCGAACATGTCGTCTGATTCTGATGCCACCTTCCCCAATTCGTCATCTTCCACTCCATTGCAATTGGACGATCCCCAAATTCGAAGATTGTCTATGCTTCTCCCTCTGCTTCTCAGTTTAGCACCTCCCCGCCAGGCCCCGGAATCCGATTCTGGTAACCGTGGTCGAGTCCGGATCCTCATAGTTGACCCTTCTGCTGGAGCCATGATCGTGATCGAAGGCTCCGGAGATCTCCAATCCGTGCTTCAGGGCCTATCGGGGAAGACCGGAGTGCTGCCGGCGTCCAAGGATTCGATTCAGGCCATGCCCAGAGTGGTGGTGACTGAAGAAGACGCGGATTGTCCGATCTGCTTGGAAGCTTACGAAGTGGGCGGCGAAGCTAGGGAAATGCCTTGCAAGCATAAATTCCACTCTGAGTGTATTGAGAAGTGGTTAGGGCTGCACGGGTCTTGCCCAATCTGCCGATATGCCATGCCGGTGGAGGAGGAAAACACTAGTATCGCCATAATGGGCAGCGAGGGCGAGCAAGAGGATGGCGAGAGGAGGGAGAGCGGTGAGGGGTTGGTATCCGTGAGTGTATGGGTGAGGTCGCTGGATGACGAAGATGATGAAGACAACGACGACGACGACGATGATCCGATGGAAGTGGATTCAGAGTCGGATCATGGCACCGGGGGATCCAATAGTGATTCACGAGAAGGGAATTCTGCAGAGGATGAAGACTCGTGGATGATGATGGATCAAGAGGCACAAGACATGGAATTCTGA 891 0.5241 MADLFFSNNLQFPFIPSSKQFSISIRHCCVRAQLLSPHSMSANMSSDSDATFPNSSSSTPLQLDDPQIRRLSMLLPLLLSLAPPRQAPESDSGNRGRVRILIVDPSAGAMIVIEGSGDLQSVLQGLSGKTGVLPASKDSIQAMPRVVVTEEDADCPICLEAYEVGGEAREMPCKHKFHSECIEKWLGLHGSCPICRYAMPVEEENTSIAIMGSEGEQEDGERRESGEGLVSVSVWVRSLDDEDDEDNDDDDDDPMEVDSESDHGTGGSNSDSREGNSAEDEDSWMMMDQEAQDMEF 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2832 296 FunFam E3 ubiquitin-protein ligase RNF181 124 202 - -
Lele07g2832 296 Pfam Ring finger domain 154 196 IPR001841 -
Lele07g2832 296 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
Lele07g2832 296 CDD RING-H2_PA-TM-RING 154 196 - -
Lele07g2832 296 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 66 200 - -
Lele07g2832 296 MobiDBLite consensus disorder prediction 41 63 - -
Lele07g2832 296 MobiDBLite consensus disorder prediction 239 258 - -
Lele07g2832 296 SMART ring_2 155 195 IPR001841 -
Lele07g2832 296 MobiDBLite consensus disorder prediction 235 296 - -
Lele07g2832 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 202 IPR013083 -
Lele07g2832 296 SUPERFAMILY RING/U-box 148 202 - -
Lele07g2832 296 MobiDBLite consensus disorder prediction 281 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2832 Lele-ChrLele07 33616636 33617526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2832 44 237 C3H Transcription Factor Family AT1G26800 37.563 4.37e-35 124