Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2786 ATGAAGAGAGAAAGATCAGACGATGTTCACAGCATCGCCATGGCCAACTACTTGATGCTGCTTTCTGAGGCCGCCGCCACCTTCTCTTCGTCCTCTTCCACCGCCTCCACCGGCCGTGTCTTCGTCTGCAAGACCTGCAACCGCCAGTTCTCCTCCTTCCAGGCCCTCGGCGGCCACCGTGCCAGCCACAAGAAGCCCCGAACGATGGCCGGTGAGGATAGTAACAGCGATGATCTTCTTCATGGTTCATCGTCATCACCGGCTAAGCCTAAAACTCATGAGTGCTCAATCTGTGGATCGGAGTTCGCCATAGGTCAGGCTTTGGGGGGTCACATGAGGAGACACAGAGCCCAAACATCTCATAATAATAAAAGTAACAACGATAACTCGTCATCAAGCGTAGAGTTTGATTCAGATGCAACGAAGAAGAGGAAGAGAAAAAGGGTTCTGTTTCTGGACTTGAACTTGACGCCTCTTGAGAACGATTTGGAGATTTTAGGGATAGGAACCTCTTCTCCTTTGCTAGTTACACTTTAG 537 0.5047 MKRERSDDVHSIAMANYLMLLSEAAATFSSSSSTASTGRVFVCKTCNRQFSSFQALGGHRASHKKPRTMAGEDSNSDDLLHGSSSSPAKPKTHECSICGSEFAIGQALGGHMRRHRAQTSHNNKSNNDNSSSSVEFDSDATKKRKRKRVLFLDLNLTPLENDLEILGIGTSSPLLVTL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2786 178 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Lele07g2786 178 MobiDBLite consensus disorder prediction 56 92 - -
Lele07g2786 178 PANTHER ZINC FINGER PROTEIN ZAT5 12 161 - -
Lele07g2786 178 Gene3D Classic Zinc Finger 39 115 - -
Lele07g2786 178 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Lele07g2786 178 MobiDBLite consensus disorder prediction 77 91 - -
Lele07g2786 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Lele07g2786 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Lele07g2786 178 MobiDBLite consensus disorder prediction 109 139 - -
Lele07g2786 178 SUPERFAMILY beta-beta-alpha zinc fingers 39 115 IPR036236 -
Lele07g2786 178 Pfam C2H2-type zinc finger 40 66 - -
Lele07g2786 178 Pfam C2H2-type zinc finger 93 118 - -
Lele07g2786 178 SMART c2h2final6 41 63 IPR013087 -
Lele07g2786 178 SMART c2h2final6 93 115 IPR013087 -
Lele07g2786 178 MobiDBLite consensus disorder prediction 122 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2786 Lele-ChrLele07 33347826 33348362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2786 1 162 C2H2 Transcription Factor Family AT2G28710 45.679 2.76e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele07g2786 zf-C2H2_6 9.8e-10 CL0361