Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2731 ATGTCAAGAGAGGTGGTGAAACAATATGAGTATATCTCTGATGACACCAAAAGAGCAGTAACATTCAAGAAAAGGAAAGCATGTATCTTGAATAAGATACAAGAACTTAGCATTCTTTGTGGTATTGATGTCGGGGCAATCGTTTACAGTGGTCCCTCTGATCCTGAACCAGAGGTTTGGCCACATCATGAAGGTGTCCAGCAAGTAATCGAGAGGTGTCAATCTAGACCCGTCTCAAAGGGGACCATGAAGAGGGAGGAATCATTACAAAAGAGGATCAACAATGGGAAAGAACTTCTTATGAGGAGAAGAAAAGCGAACGATGAAGAAGAGATTTCCCAACTCATGATCCAATGTATGGAAGGGAAAACAGTACCTCCCCTTACAAATTGGAGTGACATGAAGATGTTGGTTGAGCAGAGACTGAAGAACATGAACAGGACAGTGCAAGAATCTGGTAATGAGATGCCAGAGGAATTGGCAGTTTTCAGAGGGAATGAGGTGTTGACTGACCAATTTCAGCAGTTCAACATAGATAATGTTCCTGCACCTCCTCCAATATCTGAAGGATTGTGCATGCCATATAGTACAACTCCACCATCATCTGAAGGATTGGAATTTAATGTGCAAAATGAAAATCTGAGCAGCCAACATCTGCAATATGGCATGTACTTGGGAAATATGGAAGATTGTATGGGAATTGGTGCATATGAGATGCCAGGACCTTCTTACAATGCCAATTACCCACATAGAATGTCTATCCAGATTGACCTGTATAATGTGTTGGATATGCTGTATGGATTTGACATGAACAGATCTTCTTGGGAATTGTCATTGAGGTTGACTCATACTACACTTTCCAATCTTGAGGTAGTTTCTTCCTGTTATATGCACTTGTTAGGGTCAGGTTTAGGGGCTATTATTGAAGAGATTTTCTCAGCTATGTTTGGTGCAGTTATGTTTTCAAAGCTATCAGTTGCAGGGTGCTATTTTGAAGGCTGTCAGATATACTATGTGGTAAAGAAGTGGAATTCTATGTTCCAGCCCCATGAAGAATTGTGCATGCCATATATTCCAACTCCGCCAACATCTCAAGGATTGGAATTTAATGTGCAGAATGAAAATCTGACCAACCCACATCTGCAGTATGGCATGTACTTGGGAAATATGGAAGATTATATGGGAATTGGTGCATATGAGATGTCACAACCTTCTGACAATGCCAATTACCAACATGTTCCATCGTTTTACAGATCATTTTCCCTGTGA 1269 0.4074 MSREVVKQYEYISDDTKRAVTFKKRKACILNKIQELSILCGIDVGAIVYSGPSDPEPEVWPHHEGVQQVIERCQSRPVSKGTMKREESLQKRINNGKELLMRRRKANDEEEISQLMIQCMEGKTVPPLTNWSDMKMLVEQRLKNMNRTVQESGNEMPEELAVFRGNEVLTDQFQQFNIDNVPAPPPISEGLCMPYSTTPPSSEGLEFNVQNENLSSQHLQYGMYLGNMEDCMGIGAYEMPGPSYNANYPHRMSIQIDLYNVLDMLYGFDMNRSSWELSLRLTHTTLSNLEVVSSCYMHLLGSGLGAIIEEIFSAMFGAVMFSKLSVAGCYFEGCQIYYVVKKWNSMFQPHEELCMPYIPTPPTSQGLEFNVQNENLTNPHLQYGMYLGNMEDYMGIGAYEMSQPSDNANYQHVPSFYRSFSL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2731 422 ProSiteProfiles MADS-box domain profile. 8 50 IPR002100 GO:0003677|GO:0046983
Lele07g2731 422 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Lele07g2731 422 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Lele07g2731 422 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Lele07g2731 422 CDD MADS_SRF_like 10 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lele07g2731 422 PANTHER MADS BOX PROTEIN 11 145 - -
Lele07g2731 422 SUPERFAMILY SRF-like 8 92 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2731 Lele-ChrLele07 32763982 32768335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2731 1 162 Type I MADS-box Gene Family AT5G48670 39.181 5.63e-24 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele07g2731 SRF-TF 1.2e-14 No_clan