Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2719 ATGTATTGCAATTTTTTGGAGCATGCAGCCGAGTATGTGAAGCAGGCGGTTCATGAGGATGATGCTGGAAACTATAAGGAGGCATTTACTCTTTATATGAATGCTTTGGAATACCTAAAGACTCATTTGAAGTATGAGAAGAACCCCAGGATCAAGGAAACAATAAACGAGAAATTTGTTCAATACTTGAGGAGGGCAGAGGAGATAAGTGCTATTCTTGGTAGAGGACAAAGTGGGCCTAACTTGTCTGGTGGTGCAACTCAATCTGATGTTGTGAGACCAAAGGCAAATACAAAGCCAAAGAGTGGAGAAGCTAGTGATAAGGATGATCCAGAGAAATCAAAGATGAAGGCTGGTCTTGATTCCGTAATTATCAGAGAGAAACCAAATGTCAAATGGAGTGATGTTGCTGGACTTGAGAGTGCCAAACAGGCATTACAAGAGGCTGTGATATTGCCGGTTAAGTTCCCTCAATTCTTTACGGGGAAGAGAAAACCATGGAGAGCATTTCTATTGTATGGTCCCCCTGGAACAGGGAAGTCATATTTAGCAAAGGCTGTAGCTACAGAGGCAGACTCAACATTCTTCAGTGTTTCATCATCAGATCTAGTTTCTAAATGGATGGGTGAAAGTGAAAAGCTGGTTTCCAGTCTTTTCCAAATGGCTCGTGAAAGTGCTCCTTCAATTATTTTTATTGATGAAATAGATTCTTTATGTGGCCAACGCGGTGAAGGCAATGAAAGTGAAGCATCGAGACGCATCAAAACTGAACTTCTTGTACAAATGCAGGGTGCAGGAAAAGAAGACCATAAAGTTCTCATTCTTGCAGCCACCAATACTCCTTATGCTCTTGATCAGGCCATCCGACGACGTTTTGATAAGAGAATATACATACCTCTCCCAGACATGAGGGCCAGGCAGCATATGTTCAAGGTGCATCTTGGAGATACCCCACATAACTTAACTGAAAAAGATTTTGAGGAATTGGCACGCAAAACTGATGGATTTTCTGGTTCAGACATTTCTGTCTGTGTTAAGGATGTACTTTTTGAACCAGTTCGTAAAACCAGGGATTCCAAATTCTTTAGGAAAACCTCTAAGGGAACGTGGATCCCTTGCGAGCCAACTGAAAAAGGAGCTGTTAACATTAGTCTGCAAGAACTTGATTCCCAAGGCCTTGCTTCAGAGATTGTGCCACCACCGATAACAAGAGAAGATTTTGATAAAGTATTGAGAAGGCAGAAGCCAACAGTAAGCAAATCTGATCTCGAAGTGCATGAGAGATTTACCCAGGAGTTTGGAGAGGAGGGTTGA 1314 0.4209 MYCNFLEHAAEYVKQAVHEDDAGNYKEAFTLYMNALEYLKTHLKYEKNPRIKETINEKFVQYLRRAEEISAILGRGQSGPNLSGGATQSDVVRPKANTKPKSGEASDKDDPEKSKMKAGLDSVIIREKPNVKWSDVAGLESAKQALQEAVILPVKFPQFFTGKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGAGKEDHKVLILAATNTPYALDQAIRRRFDKRIYIPLPDMRARQHMFKVHLGDTPHNLTEKDFEELARKTDGFSGSDISVCVKDVLFEPVRKTRDSKFFRKTSKGTWIPCEPTEKGAVNISLQELDSQGLASEIVPPPITREDFDKVLRRQKPTVSKSDLEVHERFTQEFGEEG 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2719 437 Gene3D - 4 74 - -
Lele07g2719 437 CDD AAA 137 300 - -
Lele07g2719 437 FunFam Vacuolar protein sorting-associated protein 4 129 309 - -
Lele07g2719 437 MobiDBLite consensus disorder prediction 100 119 - -
Lele07g2719 437 SMART AAA_5 166 302 IPR003593 -
Lele07g2719 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 433 IPR027417 -
Lele07g2719 437 ProSitePatterns AAA-protein family signature. 272 291 IPR003960 GO:0005524|GO:0016887
Lele07g2719 437 Pfam MIT (microtubule interacting and transport) domain 6 70 IPR007330 -
Lele07g2719 437 MobiDBLite consensus disorder prediction 77 95 - -
Lele07g2719 437 FunFam vacuolar protein sorting-associated protein 4A 302 417 - -
Lele07g2719 437 SMART smart 2 80 IPR007330 -
Lele07g2719 437 Gene3D - 129 425 IPR027417 -
Lele07g2719 437 Gene3D - 302 417 - -
Lele07g2719 437 MobiDBLite consensus disorder prediction 77 119 - -
Lele07g2719 437 PANTHER AAA DOMAIN-CONTAINING 23 435 - -
Lele07g2719 437 SUPERFAMILY MIT domain 3 86 IPR036181 -
Lele07g2719 437 Pfam Vps4 C terminal oligomerisation domain 370 434 IPR015415 -
Lele07g2719 437 Pfam ATPase family associated with various cellular activities (AAA) 171 300 IPR003959 GO:0005524|GO:0016887
Lele07g2719 437 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2719 Lele-ChrLele07 32698816 32702638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2719 165 374 Calmodulin-binding Proteins AT3G56690 34.906 3.85e-35 137