Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2679 ATGTTATCCTCGGGTTTGCCTTTCCAATCCTTTAGAAGCCACCAAAGGAAGCCTCTTTGCTCTTCTAATTCATTGGGAATGTCCAATACTTGTGATCCAAATCGAAGTATAGCAGTGAAGTCTGCTTCTGGTTCCATGTCCAGTGCGGGGACAAATAGTGCCAATGTGAAGGAAGAGGAAAAATCTGAGACATATAGTCATAATATGACTGAAGCCATGGGTGCCGATTTGACTTATAAGCACGAACAGGGGATGAACTACAACTTCATTCGTCCAGACTTAATTGTAGGATCATGCCTGCAGACTCCTGAAGATGTTGACAAGCTTCACGTAAAAGGAGTGAAAACTATATTTTGCTTGCAACAAGATCCAGACCTAGAATACTTTGGAGTTGATATCAAGGCCATTCGAGAATATGCCGGGTCTTGCAATGACATTCAACACTTGCGGGCTGAGATAAGGGACTTTGATGCATTTGACTTAAGGATGAGGCTTCCAACTGTAGTTAGCAAATTATACAAGGCCATAAATCGCAATGGGGGTGTGACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCGGCTGTTGCAGTGGCTTATATGTTTTGGGTTCAGGGTTATAAACTTGATGAGGCTTATAGTTTGCTTCTGAGCAAAAGACCATGCTTCCCAAAGTTGGATGCAATAAAAAGTGCAACAGCTGACATGCTTACAGGCTTCAGAAAAAAGCCTGTCATGTTGACTTGGGAAGACAACAATTGCACTTCAGTTGAGGTTTCTGGACTTGATATTGGATGGGGCCAGATAATACCCCTGCATTATGATGACAAACAGCGTTTGTGGGTTCTCAAGAGGGAATTAGCTGTAGGGCACTATGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAATCAGAATGAGCTTGTGACCTCTCCCAACAAAGATGGCCATGTCAATAATTATCTGCAAGTCATTGACGAAACAGATGGTGCCGATACCTCCCTAAGGAAGAGGTTGATGGGTGATGATCCTAATCTCACAAAGGATGAACGGCTGAGAATAAGACAGTTTCTAGAAGCTCTTCCTGATGAAGAACCATGA 1107 0.43 MLSSGLPFQSFRSHQRKPLCSSNSLGMSNTCDPNRSIAVKSASGSMSSAGTNSANVKEEEKSETYSHNMTEAMGADLTYKHEQGMNYNFIRPDLIVGSCLQTPEDVDKLHVKGVKTIFCLQQDPDLEYFGVDIKAIREYAGSCNDIQHLRAEIRDFDAFDLRMRLPTVVSKLYKAINRNGGVTYIHCTAGLGRAPAVAVAYMFWVQGYKLDEAYSLLLSKRPCFPKLDAIKSATADMLTGFRKKPVMLTWEDNNCTSVEVSGLDIGWGQIIPLHYDDKQRLWVLKRELAVGHYEYKYIVDGEWTCNQNELVTSPNKDGHVNNYLQVIDETDGADTSLRKRLMGDDPNLTKDERLRIRQFLEALPDEEP 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2679 368 SMART dsp_5 86 244 IPR020422 GO:0006470|GO:0008138
Lele07g2679 368 ProSiteProfiles Dual specificity protein phosphatase domain profile. 86 243 IPR020422 GO:0006470|GO:0008138
Lele07g2679 368 Gene3D Protein tyrosine phosphatase superfamily 79 359 IPR029021 -
Lele07g2679 368 Gene3D Immunoglobulins 241 331 IPR013783 -
Lele07g2679 368 CDD DSP_laforin-like 85 232 IPR045204 GO:0019203|GO:0046838
Lele07g2679 368 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 83 228 IPR029021 -
Lele07g2679 368 Pfam Glycogen recognition site of AMP-activated protein kinase 245 328 IPR032640 -
Lele07g2679 368 Pfam Dual specificity phosphatase, catalytic domain 141 224 IPR000340 GO:0008138|GO:0016311
Lele07g2679 368 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 24 366 - -
Lele07g2679 368 MobiDBLite consensus disorder prediction 42 61 - -
Lele07g2679 368 CDD E_set_AMPKbeta_like_N 245 326 - -
Lele07g2679 368 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 79 263 - -
Lele07g2679 368 SUPERFAMILY E set domains 244 326 IPR014756 -
Lele07g2679 368 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 241 331 - -
Lele07g2679 368 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 163 222 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2679 Lele-ChrLele07 32318411 32328490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2679 85 367 Protein tyrosine phosphatase (PTP) family AT3G52180 66.784 1.25e-143 407