Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2655 ATGGCTGGTAAAGAAGAAAACCGTATATTTGTGGGAGGCCTGTCTTGGGATGTAACGGAGCGTCAGCTTGAGCATGCCTTTAGTCGTTGCGGCAAAGTTATTGAATGCCAGGAATGGAAGAAGCGTTTGCATTTTGATGATTTGTTGTTAGTTTTTGGCTACCCATTGTTTATACTTCCTGTTTTCAAGTGGGAAAATAATAATGCTTATTATAACACAGAGATTCCGGTTGTGCAAGTCAGATATCATTATCTTGTATTGAGAGACCGTTTAAAGATCATGTTGGAAAGGGACACAGGTCGTCCACGTGGATTTGGGTTTATCACATTTGCTTATCGAAGGGAAATGGAGGATGCAATCAAGGAAATGCATGGACGGGAAATTGGTGACCGCATTATCTCTGTCAACAGGGCCCAGCCCAAAATGGGGTCAGATGATCTAGATCATGGTTACTCATCGGGTGGCAGAGGAAATTATGGGGTGGGAGGCAGGGTAGGACAGGATGACTGCTTCAAATGTGGTCGACCTGGTCACTGGGCCCGAGACTGTCCTTTGGCAGGAGGAGGCCGTGGTGGGGGTGGGGGTTCATTTTCTTCACGTTCTAGGTTTGGAGGTGCTGGTGGCCATGGGGATCGCCTTGGTGAACGTGATCGATTTATTGATGATCGTTATGATGGAGGACGTTTTGGAGATAGGGAACGCTTTGACAGCCGAGATAACAAATATGGCGGCAACCGTGATCACTATTATAGTGACAGGTACCGGCCTAGTGGAGATCGGTTTGCAAATGAGTCATATGGTGGGTCAGACCGTTATCCACAAAATAGTTATGGGAAAGATAGAGGCTATGACAGGTACGGCAGTGCAAGAAGTAATGATAGGTACGGAAGTGGAGCACCAGCACGAGACCAAGGAAGGAGTTTCAGGGGTGGCCGACGTGGTGGTCCTTATGACCGTCCAAGCAGGGGTGGTCGTCCCTCTTCATTCGACCGGTACTAA 999 0.4785 MAGKEENRIFVGGLSWDVTERQLEHAFSRCGKVIECQEWKKRLHFDDLLLVFGYPLFILPVFKWENNNAYYNTEIPVVQVRYHYLVLRDRLKIMLERDTGRPRGFGFITFAYRREMEDAIKEMHGREIGDRIISVNRAQPKMGSDDLDHGYSSGGRGNYGVGGRVGQDDCFKCGRPGHWARDCPLAGGGRGGGGGSFSSRSRFGGAGGHGDRLGERDRFIDDRYDGGRFGDRERFDSRDNKYGGNRDHYYSDRYRPSGDRFANESYGGSDRYPQNSYGKDRGYDRYGSARSNDRYGSGAPARDQGRSFRGGRRGGPYDRPSRGGRPSSFDRY 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2655 332 SMART c2hcfinal6 169 185 IPR001878 GO:0003676|GO:0008270
Lele07g2655 332 ProSiteProfiles Zinc finger CCHC-type profile. 170 184 IPR001878 GO:0003676|GO:0008270
Lele07g2655 332 MobiDBLite consensus disorder prediction 306 332 - -
Lele07g2655 332 SUPERFAMILY RNA-binding domain, RBD 5 143 IPR035979 GO:0003676
Lele07g2655 332 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 133 IPR000504 GO:0003723
Lele07g2655 332 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 37 IPR000504 GO:0003723
Lele07g2655 332 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 324 - -
Lele07g2655 332 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 140 IPR000504 GO:0003723
Lele07g2655 332 Gene3D - 166 192 - -
Lele07g2655 332 Gene3D - 1 165 IPR012677 -
Lele07g2655 332 SMART rrm1_1 8 136 IPR000504 GO:0003723
Lele07g2655 332 MobiDBLite consensus disorder prediction 209 259 - -
Lele07g2655 332 SUPERFAMILY Retrovirus zinc finger-like domains 154 189 IPR036875 GO:0003676|GO:0008270
Lele07g2655 332 Pfam Zinc knuckle 170 184 IPR001878 GO:0003676|GO:0008270
Lele07g2655 332 MobiDBLite consensus disorder prediction 190 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2655 Lele-ChrLele07 32083432 32088013 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2633 05 42215349 42226018 Lele07g2655 07 32083432 32088013 hybridization
Lele06g2620 06 34079897 34084455 Lele07g2655 07 32083432 32088013 hybridization