Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2625 ATGGGACCCAATTTCATGGACGAGATAGACTGTGGCAGCTTCTTCGACCACATTGACGACCTCCTCGATTTCCCAGCCGAAGATGTCGACGCCGCCTCCTTGCCCTCCACCGCCGTGAGTTGCAACTCCTTCCCCACCGCCTGGCCCGCTGCGTCCGACTCCTTGCCCGGCTCCGACTCTGTCTTCTCCGCCAACAACGCCTCCGACCTCTCCGCCGAGCTTTCAGTTCCGTATGAAGACATTGTCCAGTTGGAATGGCTTTCGAACTTTGTGGAGGACTCGTTCACTGGTGGAAGCCTCACCATGAAGAAATTGGAGCAATCTTGCGTCACCAATAACGACTCGGCGCACAACCAATTCCAGATTTCAAGCCCGGTCTCTGTCCTCGAGAGCAGCAGCTCCTGCTCCGGGGAGAAGCCGGTGGCGGCGCCACCTCGAAGCCCGCCGGAAATGGTCGTCCCCGTGCCTTGTGGTGGACGTGCACGCAGCAAGCGCCCACGTCCTGCCACATTCAAGCCTCGTCCCTCTATGCAGCTCATTTCCCCTACATCCTCTGTCGGTGAAAACACACAGCGGAATTCAGATTGTGATAATTTCGTGGAGTCTCATCCGTTGATCAAGATACCGAAGCAATCTTCAGGGGAGCACAAGAAGAAGAAGAAGAAGATCAAATTCTCTTATCCATTAGGCCCTGCTGGCATGAATCAGCAGAATAATAATGGTTCATCACAAGCAGCAGTGAGGAAATGTATGCATTGTGAGATAACAAAGACACCACAATGGAGGGCAGGTCCAATGGGGCCAAAAACACTATGCAATGCTTGTGGGGTTCGATACAAATCCGGGAGGCTATTCCCGGAATATAGACCGGCGGCAAGTCCGACATTTTGCCCATCGTTGCACTCGAATTCCCATAAGAAGGTGCTCGAAATGAGAAGCAAAGTACCAGAAGAAACTGATGCTTCCCCAGAGCTCATTCCAAACACTGACAGCAGCCTTACCCTGGAATACGTGTGA 1017 0.532 MGPNFMDEIDCGSFFDHIDDLLDFPAEDVDAASLPSTAVSCNSFPTAWPAASDSLPGSDSVFSANNASDLSAELSVPYEDIVQLEWLSNFVEDSFTGGSLTMKKLEQSCVTNNDSAHNQFQISSPVSVLESSSSCSGEKPVAAPPRSPPEMVVPVPCGGRARSKRPRPATFKPRPSMQLISPTSSVGENTQRNSDCDNFVESHPLIKIPKQSSGEHKKKKKKIKFSYPLGPAGMNQQNNNGSSQAAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSLHSNSHKKVLEMRSKVPEETDASPELIPNTDSSLTLEYV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2625 338 Pfam GATA zinc finger 250 283 IPR000679 GO:0006355|GO:0043565
Lele07g2625 338 MobiDBLite consensus disorder prediction 176 192 - -
Lele07g2625 338 FunFam GATA transcription factor 239 324 - -
Lele07g2625 338 ProSiteProfiles GATA-type zinc finger domain profile. 244 280 IPR000679 GO:0006355|GO:0043565
Lele07g2625 338 ProSitePatterns GATA-type zinc finger domain. 250 275 IPR000679 GO:0006355|GO:0043565
Lele07g2625 338 CDD ZnF_GATA 249 296 IPR000679 GO:0006355|GO:0043565
Lele07g2625 338 PIRSF Txn_fac_GATA_plant 4 333 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lele07g2625 338 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 248 307 - -
Lele07g2625 338 PANTHER GATA TRANSCRIPTION FACTOR 14 323 - -
Lele07g2625 338 SMART GATA_3 244 294 IPR000679 GO:0006355|GO:0043565
Lele07g2625 338 Gene3D - 245 294 IPR013088 GO:0006355|GO:0008270
Lele07g2625 338 MobiDBLite consensus disorder prediction 131 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2625 Lele-ChrLele07 31700191 31701349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2625 12 322 C2C2-Gata Transcription Factor Family AT1G08010 36.164 1.07e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele07g2625 GATA 5.7e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2605 05 41870762 41871906 Lele07g2625 07 31700191 31701349 hybridization
Lele06g2589 06 33704682 33705884 Lele07g2625 07 31700191 31701349 hybridization