Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2579 ATGTCAGTGATGTCAAAGGTGTTAATTGGATGGCCCAGACCTTCTCTGTTTCTTCAGTTTCCAAACTTTAGAACAGCATCTATATCGATGGTTGCTGGGATGAAGGCTCCTTGGTGGTACAGCTCCATTTTGTTGGGACTTTTTTCACTTCTTACAGCAGATCCAGGTATAGCCATGTCGGGAAACACAAGTTGCACCGTTTACATAGGCAATCTAGATGAGAGAGTCACGGAGAGGATCTTATATGATATATTAATTCAAGCAGGACGAGTGGTGGACCTGTATATTCCTAGAGATAAGGAATCTGAGAAACCTAAAGGATTTGCCTTTGCAGAATACGAGAACGAGGAGATTGCGGATTATGCTGTCAGGCTTTTCTCAGGCCTTGTGAAACTCTACAACAGAATACTGAAGTTCGCGATATCTGGCCAAGACAAACCTACTCCAAATGGTTCTGCAGTAGCTACACCGTTGTCAAATTCTTCTCACCGATCGAGGCCCCACCCTGTGCCAATAAATAATACAGAAATTTCTCCGCACTCTGCTAGGTTACCAACACCTAGCCGAATTTCAGATAACCCTGTAAATTACTCCCGAGTTACCCACCGGGAAGTTGACCAATCTAGTGAGTATGGATCTCTCTACAACGGCAACGATTATGAATACAGCCAGAGAGCCTTTGGGCCAACATCGGATAGCATTACCCGGTATAGGTCACGACGCTATGATACAAGTGTTGCCACTTATTGTCGGGGATGGTCTAATATGGATTATTCTGGATTGTGGGGGCTATAG 795 0.4453 MSVMSKVLIGWPRPSLFLQFPNFRTASISMVAGMKAPWWYSSILLGLFSLLTADPGIAMSGNTSCTVYIGNLDERVTERILYDILIQAGRVVDLYIPRDKESEKPKGFAFAEYENEEIADYAVRLFSGLVKLYNRILKFAISGQDKPTPNGSAVATPLSNSSHRSRPHPVPINNTEISPHSARLPTPSRISDNPVNYSRVTHREVDQSSEYGSLYNGNDYEYSQRAFGPTSDSITRYRSRRYDTSVATYCRGWSNMDYSGLWGL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2579 264 MobiDBLite consensus disorder prediction 146 195 - -
Lele07g2579 264 Gene3D - 58 150 IPR012677 -
Lele07g2579 264 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 59 245 - -
Lele07g2579 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 135 IPR000504 GO:0003723
Lele07g2579 264 SMART rrm1_1 66 140 IPR000504 GO:0003723
Lele07g2579 264 SUPERFAMILY RNA-binding domain, RBD 59 141 IPR035979 GO:0003676
Lele07g2579 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 144 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2579 Lele-ChrLele07 31166240 31169303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2579 17 129 Eukaryotic Initiation Factors Gene Family AT3G16380 30.702 3.52e-07 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2562 05 41364240 41367499 Lele07g2579 07 31166240 31169303 hybridization
Lele06g2544 06 33181671 33184065 Lele07g2579 07 31166240 31169303 hybridization