Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2573 ATGAATCTTCTTGTGTTTTTATTCTTCTCTGTGACGGCTTCATGCTATATGGCGGTGGCCAAGGTGGTGCTCATTGGGAACAACGTCACTCTATCCTTCGACGACATTGAAGCTAGTTTTGCTCCAGCGATGAAAGGTTCTGGAGAATGTGGGGTCTTGTATATTGCAGAGCCGGTTGATGCTTGTACAGAACTGACAAATAATGTTGAACCGCTTTCAAATACAAGTTCACCTTTTGTTTTAATAATTAGAGGGGGGTGTAGCTTTGAAGAGAAAGTCAGAAGAGCACAAAAGGCTGGCTTCAAAGCGGCAATTGTGTATGACAATGAAGACGATGGTCCCTTAGTTTCAATGGCAGGAAATTCAGGCGGTATAAAAATACATGCAGTATTTGTAACTAAAGCCTCGGGTGAAACACTGAAAAGATACGCTGGACTGACGAACATTGAAATGTGGCTAATTCCAAGTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTCATTTCCCTACTAGCAATGTCAGCAGTACTGGCTACTTGTTTCTTTGTCCGGAGGCATCGCATACGAAGGGAAAGGCCTCAAGCTTCTCGTGTTCGTGAGTTCCATGGGATGAGCAGTCGCCTAGTGAAAGCAATGCCTAGTTTGATATTTACTGCTGTTTTAGAGGATAATTGTACATCGATGACATGTGCAATATGCCTTGAGGACTATTGTGTTGGAGAGAAGCTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCTTGCGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGTAAGCGTGATGCAAGGACTGGTCTACCTGACCCTCCACCTTCAGAATCCACGCCTTTGCTTTCATCTGGCCCAGCATCTGCAGCATCCTCCATAGCCTCATCTGTGAGATCTTCATTAGCGTCATCTTCTGCAATACTAATTGGTCGGGCATCATCACGGTCCCCTTCTGTTTCTCGGGACCATTCTTTGGCTAGTGCTCCCTACATTCAGCCATCACTTAGGTCCCATCGCCAATCTCCCTTCATGAGTGTCAGTCGAAGCTCAGTAGATCTTAGGAATGCGTCCCAAAGATCTCAAGCTTCTCATTTGAATTCTCCATACCCATCAATGTCATCAATGAACTCAAGGTACTTGTCTCCACATATTCGAAGTCCAAGCTATGTTTCAGGAAGTTATATTGGTTCTTCTAGTCATCGTAATCATCCACTTCGTCATAGTGAGTCAGCTGCGAGTTTTTCTCCATTTGCTTCTGCCCAGTCCCTTCCAGAGTGCTGA 1314 0.4467 MNLLVFLFFSVTASCYMAVAKVVLIGNNVTLSFDDIEASFAPAMKGSGECGVLYIAEPVDACTELTNNVEPLSNTSSPFVLIIRGGCSFEEKVRRAQKAGFKAAIVYDNEDDGPLVSMAGNSGGIKIHAVFVTKASGETLKRYAGLTNIEMWLIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQASRVREFHGMSSRLVKAMPSLIFTAVLEDNCTSMTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLPDPPPSESTPLLSSGPASAASSIASSVRSSLASSSAILIGRASSRSPSVSRDHSLASAPYIQPSLRSHRQSPFMSVSRSSVDLRNASQRSQASHLNSPYPSMSSMNSRYLSPHIRSPSYVSGSYIGSSSHRNHPLRHSESAASFSPFASAQSLPEC 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2573 437 Pfam PA domain 60 140 IPR003137 -
Lele07g2573 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 279 IPR013083 -
Lele07g2573 437 SUPERFAMILY RING/U-box 225 286 - -
Lele07g2573 437 MobiDBLite consensus disorder prediction 348 385 - -
Lele07g2573 437 SUPERFAMILY PA domain 78 156 IPR046450 -
Lele07g2573 437 ProSiteProfiles Zinc finger RING-type profile. 232 274 IPR001841 -
Lele07g2573 437 CDD mRING-H2-C3H2C2D_ZSWM2 231 274 - -
Lele07g2573 437 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 192 279 - -
Lele07g2573 437 MobiDBLite consensus disorder prediction 419 437 - -
Lele07g2573 437 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 156 289 - -
Lele07g2573 437 MobiDBLite consensus disorder prediction 402 437 - -
Lele07g2573 437 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 20 154 - -
Lele07g2573 437 Gene3D - 14 152 - -
Lele07g2573 437 SMART ring_2 232 273 IPR001841 -
Lele07g2573 437 CDD PA_C_RZF_like 8 161 IPR044744 -
Lele07g2573 437 Pfam Ring finger domain 231 274 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2573 Lele-ChrLele07 31130965 31136374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2573 20 436 C3H Transcription Factor Family AT1G22670 47.796 1.20e-110 330
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2557 05 41324997 41330413 Lele07g2573 07 31130965 31136374 hybridization
Lele06g2539 06 33145952 33151372 Lele07g2573 07 31130965 31136374 hybridization