Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2550 ATGGAAGATCCAGAGGAAGAAGAGCTTCTGAATCTCAGCCTCTCAGTTTCTGCAGGTAGAGAGAGGAAAAAGAAAGGAAAGATGATGATGATGAGTGCCAGAGATCATTATCATCACTATCATCATCATCTTCACAACAATAATTCCTTCTGCAACTCCTACGAACAAGCTGCAGGCATCGAAGGGAAGATCTTCAGGCTTCTTCAAACCAGAGATCAAATGCTTCGTCAAGATCTCAACCTCCTGAGAAATAATCAAAGAGGAGTTTTAGAAGATGGTAATGGCCTCCCTCTGATTCATCTTCTTCTCAGTACAGCCACTTGTGTTGACGACAATAACATTAACTCTGCCCTAGACAACCTCACTCAGCTTTACCAAACTGTCTCTCTCACCGGTGACTCCGTCCAACGCGTCGTCGCTTACTTTGCCGACGGCCTCGCCGCCCGCCTCCTCACCCGAAAATCCCCCTTCTACGACATGCTCATGGAAGAACCCACAAGTGAAGAAGAGTTCTTAGCTTTCACAGACCTATATAGAGTCTCACCTTACTACCAATTCGCTCACTTCACAGCCAACCAAGCCATCCTCGAAGCCTTCGAGAACGAGGAAGACAAGAACAACCGGGCATTACATGTTATAGACTTCGATGTCTCCTATGGTTTTCAATGGCCTTCTCTGATACAATCTCTGTCGGAGAAAGCCACCAGCGGCAACAGAATATCTCTGAGAATCACCGGCTTCGGGAAGAACCTCAAAGAGCTTCAAGAAACAGAATCTCGTTTGATCAGCTTCTCAAAGGGATTCACCAATCTGGTGTTTGAATTCCAAGGTTTACTTCGTGGGTCACGAGTGATTAACCTAAGAAAGAAAAAGAATGAAACAGTGGGTGTTAATTTGGTCTCTTATTTGAACACATTGAGTAGTTTTATGAAGATTTCTGACACATTGGGATTTGTTCATTCGCTTAATCCCTCCATTGTTGTGCTTGTGGAGCAAGAAGGAAGTAGAAGCCCCAGAACGTTCTTGTCGAGATTCACCGATTCGTTGCACTATTTCGCCGCCATGTTCGATTCTCTTGATGATTGCTTACCGATGGAGAGCACAGAGAGGTTAAGGATAGAGAAGAAGCTTCTCGGGAAAGAGATCAAAGCGATGTTGAATTACTACGACGTGGACGGCGTGGATTGTCCCAAGTACGAGAGGATGGAGACATGGAAGGCGAGGATGGAGAGCCATGGATTCACCGGAACAAAAGTGAGTTCAAAAGCTTTGATTCAAGCGAAGCTACTTCTGAAAATGAGGACTCATTATTCTCCGCTTCAGTATGAAGACGACGGCGGAGGAGGTGGCGGCGGCGGCAGTTTCAGGGTTTCAGAGAGAGACGAAGGAAGAGCGATATCTTTGGGATGGCAAAATAGGTTTCTTCTTACAGTCTCGGCATGGCAGACAGTAGTGTGA 1458 0.4588 MEDPEEEELLNLSLSVSAGRERKKKGKMMMMSARDHYHHYHHHLHNNNSFCNSYEQAAGIEGKIFRLLQTRDQMLRQDLNLLRNNQRGVLEDGNGLPLIHLLLSTATCVDDNNINSALDNLTQLYQTVSLTGDSVQRVVAYFADGLAARLLTRKSPFYDMLMEEPTSEEEFLAFTDLYRVSPYYQFAHFTANQAILEAFENEEDKNNRALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGKNLKELQETESRLISFSKGFTNLVFEFQGLLRGSRVINLRKKKNETVGVNLVSYLNTLSSFMKISDTLGFVHSLNPSIVVLVEQEGSRSPRTFLSRFTDSLHYFAAMFDSLDDCLPMESTERLRIEKKLLGKEIKAMLNYYDVDGVDCPKYERMETWKARMESHGFTGTKVSSKALIQAKLLLKMRTHYSPLQYEDDGGGGGGGGSFRVSERDEGRAISLGWQNRFLLTVSAWQTVV 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2550 485 ProSiteProfiles GRAS family profile. 89 482 IPR005202 -
Lele07g2550 485 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 80 477 IPR005202 -
Lele07g2550 485 Pfam GRAS domain family 98 482 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2550 Lele-ChrLele07 30896490 30897947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2550 94 482 GRAS Transcription Factor Family AT1G14920 33.582 2.67e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele07g2550 GRAS 2.4e-90 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2537 05 41139231 41140679 Lele07g2550 07 30896490 30897947 hybridization
Lele06g2516 06 32950288 32951309 Lele07g2550 07 30896490 30897947 hybridization