Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2548 ATGCAGGCAAAAGTTTCCTCTAATCCACCATCTTTTCCAGATTTCAATTTGCAGCATGGTAGTCAACGGAGGTGGGAAGATCCCTCGATGTCGGATTACGGTATAAGGATGGAAGCCTTGTTTAAAGAATTCACCCAAGCCTGTGGAGCCCAGTCCTTGCTTCCATGTGGTTCCAACAACGAGATCAAGATCCCAAATCAAGGAAATTGTCAGATGGGCAACTCGTCACGAACTGGTAAACTCCAAGATTGGGATCCTACCACAATGTTGGAAAATCTTTCTTTCCTGGAAGATAAGATTCATCATCTCCAGGGTCTTGTTCATTTGATTGTTGATCAGAAAGGTCAACAATTCCGGCAATCCCCCGATGAAATTATAACTCAAGAGAAGCAGCTTGTCACGGCCGATCTGACATCGATTATCGTTCAATTGATCTCTACAGCAGGAAGTCTTCTTCCTTCTGTCAGGCTTACTACTTCAAACACCGGTCCATCCGTCAGACAGAATGGCCAGATTCCTGGGATTACTTTTCCTTCTGGATTAAATCTGAGTAGTAATATCCAACCACGACTTGATATCAGAGATAAAGTACCTGATCAATCCAACCAGATTGATCTTACTAATAACATGTGTGAAATGGAGCAAAACCACGTGGAAGAACACGAATCAAAAGATGAAGAGGATGTGGATGAGGGCGAGAACCTTCCGCCCGGATCCTTTGAGATTTTACAGCTAGAAAAGGAAGAAATCCTTGCTCCTCATACGCACTTCTGTACGATATGTGGGAAGGGATTCAAGAGAGATGCAAATCTTCGGATGCACATGAGAGGCCACGGTGATGAGTACAAAACCCCAGAAGCGCTCGCAAAACCTAACAAAGAATCCGTGTCTGAACTGAAGCTCATCAAGAGGTATTCCTGTCCCTACCCTGGCTGCAAGCGTAATAAAGATCACAAGAAGTTTCAACCTCTGAAGACTATCTTATGTGTGAAAAACCATTACAAAAGAAGTCACTGCGACAAGAGTTACATTTGCAACAGGTGTCACACGAAGAAATTTTCGGTCATGGCAGACCTTAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTGTTTCAAGGCCATACCCCGGCGATACCCTCAGATGAATCAAAAGCGCCAGCCGGGCTAACTGATATGGAAATCAGGGAGAACAACAACAATAGTAATAATAATAAGGGAGGAAGCATTAACTTGAGCTTTGGATCAAATGCTTCTTGTTGTGAAAATGGAATTCAAAACATAATGGATATGAAAGGTATTATTATTGATGATCCTATCAGTTACCTCTCATCGTTGAACTTTGAAACCTGTAACTTTGGTGAATTCAATGATTTTCCTCGACCCCTATTCGAAGACATCGCCGAAGGTTCTTTTCCTTTTCTCATGTCCGAATCCTTCAATTATTCTCCTAAATCTGGGGGAGAATCAAGTTCTGCCAATCTGTTGTGA 1551 0.4236 MQAKVSSNPPSFPDFNLQHGSQRRWEDPSMSDYGIRMEALFKEFTQACGAQSLLPCGSNNEIKIPNQGNCQMGNSSRTGKLQDWDPTTMLENLSFLEDKIHHLQGLVHLIVDQKGQQFRQSPDEIITQEKQLVTADLTSIIVQLISTAGSLLPSVRLTTSNTGPSVRQNGQIPGITFPSGLNLSSNIQPRLDIRDKVPDQSNQIDLTNNMCEMEQNHVEEHESKDEEDVDEGENLPPGSFEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALAKPNKESVSELKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRSHCDKSYICNRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPSDESKAPAGLTDMEIRENNNNSNNNKGGSINLSFGSNASCCENGIQNIMDMKGIIIDDPISYLSSLNFETCNFGEFNDFPRPLFEDIAEGSFPFLMSESFNYSPKSGGESSSANLL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2548 516 MobiDBLite consensus disorder prediction 1 24 - -
Lele07g2548 516 Gene3D Classic Zinc Finger 239 308 - -
Lele07g2548 516 MobiDBLite consensus disorder prediction 1 28 - -
Lele07g2548 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 283 IPR013087 -
Lele07g2548 516 ProSitePatterns Zinc finger C2H2 type domain signature. 258 278 IPR013087 -
Lele07g2548 516 SMART c2h2final6 343 365 IPR013087 -
Lele07g2548 516 SMART c2h2final6 256 278 IPR013087 -
Lele07g2548 516 SMART c2h2final6 305 338 IPR013087 -
Lele07g2548 516 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 74 430 IPR044300 GO:0010044|GO:0010447
Lele07g2548 516 SUPERFAMILY beta-beta-alpha zinc fingers 255 280 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2548 Lele-ChrLele07 30878112 30879662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2548 224 516 C2H2 Transcription Factor Family AT1G34370 67.797 1.52e-137 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele07g2548 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g2548 07 30878112 30879662 Lele07g2548 07 30878112 30879662 ECH
Lele05g2534 05 41109121 41110647 Lele07g2548 07 30878112 30879662 hybridization
Lele06g2514 06 32935415 32936932 Lele07g2548 07 30878112 30879662 hybridization