Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2539 ATGTCTGCTTCAGCTGCATCCGCTGCCGCCGGCGATTACGTTTGGGCTTCTTGTGCCTCCGATTCTCCTCCGAGAATTTCTCTCACACCTGATCAGGTGAATCTCAGTGCCAAAGCGTTGGCCAGCTTTAGGAAGAAGACGCCGGAGATGATCAAGCAAGAGTTCGAACAATTGGAGAAGTCTTCATGGGAGAGCGTTTCAGAGTTCATAGCAGCACAAGGTCCATTGCGAGATACTTGTAAGGATTTCTGGGAAATGGTAATCCAATATCGCTGCCCCGTCATTGTGATGCTCACTGGACTCGTTGAGAAAGAGCTTGAAAAATGTCACGATTATTATCAAGCTGAGGGTGGAACTTTAAAGTTTGGTGATATCTCTGTTGTTTGTGAATGGAAGAAAACTGCTGAAAACTCTTTGGTACTGCGCCATTTGAAGGTTAAGCGTGCAGAGGAAGATCAACCCTTATCTGTTTTGCACATCCACTATACTGCTTGGCCTGACAATGGAGTTCCCAGTGATACCCATGCTAGGATCCTTGCTGAGGAAAAGTCTGCCTTGAATCTTCAGGATACCATATCTGCTTTTAGGTCTAAGCGATATGGAATGGACCAATACAATTTCTGCTATGAAGCCATTGTAGAGGAACTGGATGAACTTAATTGGTGCTCTGGCTCTGTGGAAATTGAAATTATGTCTCCATCATCTGGTAGCGACTGGCTTTCTTTCATGAGGGATCAATTTGTTCTTGCTAAATTGGTGGATAGTCGTAAGCTCCATGCTTATAAATTACAATCCCTGATTAAGCTTCATTGGAAGGTTCAAGGGTTGATTTCAGTAGTACAGCAGTTCAATAACTCCTTTCTTCTTCATTTTCATTCTGAAGAGGACTTAAAATATATGGTTTCACAGGGTTCATGGATGACTGGATTTAAGATTGATACGCACTGTTGCTCTAGGCCTTTAGACAAGCGAAAAAGGGAAACTTCTCAATTGGCTGATATAGTTGGTAAAAGGCCACGAATTCTGAATGTGAGAGTTACTTTTCCTGAATGGAATGGCAGCTATGGTGATATTGAAAGAGTGTTTTTTTTTATGGAAAAGCCTTCCCTAGCTAAAAATAGGAAGCGCAAGCATGAGCAACAGTATGTATATGCTGAGTTATTTTGCAAAAAGGCAAAAAAATTTCCAAAGGGGGTGTCTACCTTAGGTGCTACATCTATTTCTAAGGAGACTCGTACTTTTTTAGAGGAGTCATTACTGCAGGAGGGTTTTGTTATTCAAGAGAAAGCTTTTAATCCAATAGAAGTGATGTCTTCCACAGCAATTTCTAAGGGGAAAAAACACAAGCTAAAGGTCATTCCAACTTTTGAGGAAGCGCAGAAAAGAATCAGATCAATGTCTAGTACCCAAAATCTTGAGAAGATTTTTCTTTTTGAGTTAGCCGTTGTGGATCACACAACTAATGGTAAGCAGACTAAATTTCATAGCCATGATTACTTGCATACACATCGTCTTTGCTTAAAGAGGAAGCTTGAGACTACATTTGAATCTGAATTTAAAGAATTCAAACGGCCTAAACTACAAGATTTTGGGGATTTTAAGGACAGGAATGAAATCACATGTTCACAGGAGGTTCATGGTTTTCAGTGTCATGTTGATATATCAAGGGATCAAAAACCTTTCTTTGATAAGAGGAAACATACTTTGAGTGTTTGCCTGACAATTTGTAAAAAGCAAAGGCTCAATGACAACTTGAACACACTTTTGTAA 1770 0.4028 MSASAASAAAGDYVWASCASDSPPRISLTPDQVNLSAKALASFRKKTPEMIKQEFEQLEKSSWESVSEFIAAQGPLRDTCKDFWEMVIQYRCPVIVMLTGLVEKELEKCHDYYQAEGGTLKFGDISVVCEWKKTAENSLVLRHLKVKRAEEDQPLSVLHIHYTAWPDNGVPSDTHARILAEEKSALNLQDTISAFRSKRYGMDQYNFCYEAIVEELDELNWCSGSVEIEIMSPSSGSDWLSFMRDQFVLAKLVDSRKLHAYKLQSLIKLHWKVQGLISVVQQFNNSFLLHFHSEEDLKYMVSQGSWMTGFKIDTHCCSRPLDKRKRETSQLADIVGKRPRILNVRVTFPEWNGSYGDIERVFFFMEKPSLAKNRKRKHEQQYVYAELFCKKAKKFPKGVSTLGATSISKETRTFLEESLLQEGFVIQEKAFNPIEVMSSTAISKGKKHKLKVIPTFEEAQKRIRSMSSTQNLEKIFLFELAVVDHTTNGKQTKFHSHDYLHTHRLCLKRKLETTFESEFKEFKRPKLQDFGDFKDRNEITCSQEVHGFQCHVDISRDQKPFFDKRKHTLSVCLTICKKQRLNDNLNTLL 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2539 589 SMART PTPc_3 38 217 IPR000242 GO:0004725|GO:0006470
Lele07g2539 589 ProSiteProfiles PTP type protein phosphatase domain profile. 25 179 IPR000242 GO:0004725|GO:0006470
Lele07g2539 589 Pfam Protein-tyrosine phosphatase 66 175 IPR000242 GO:0004725|GO:0006470
Lele07g2539 589 Gene3D Protein tyrosine phosphatase superfamily 41 180 IPR029021 -
Lele07g2539 589 PRINTS Protein tyrosine phosphatase signature 69 89 IPR000242 GO:0004725|GO:0006470
Lele07g2539 589 PRINTS Protein tyrosine phosphatase signature 155 172 IPR000242 GO:0004725|GO:0006470
Lele07g2539 589 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 217 IPR029021 -
Lele07g2539 589 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 62 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2539 Lele-ChrLele07 30772461 30783105 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2539 58 219 Protein tyrosine phosphatase (PTP) family AT1G71860 45.673 1.02e-48 171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g2539 07 30772461 30783105 Lele07g2539 07 30772461 30783105 ECH
Lele05g2527 05 41012895 41021808 Lele07g2539 07 30772461 30783105 hybridization
Lele06g2507 06 32847239 32852027 Lele07g2539 07 30772461 30783105 hybridization