Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2538 ATGGCTGCTTCTTCATCAGGAAATTCCATTTCTACTACTTCTTCCTCTTCTTTCTCTCCCAAACCGTTGGAATTCTCCCCCGATTCCCCCCAGAGAACCTCACTCACCCCCGATCAGGTCAAGTACTGCTCCGAAGCGCTCACCATCTTCAGGGAGAAGCTTCAGACGCCGCACATGATCGTTCAAGAGTTCGCTCACTTGCAGGCTAATAGGATAGCACCGAGTGAGATGAGGAGAAGATGCACTGTAAGTCTAAATGACGTAAATGTGAGCAAAAATCGGTATACAGATGTCCTGCCATTTGACAAGAACAGAATTGTTCTTGAATCAAGTTCAGATTATAGACCTGAAGCCAAGGGATATGTCAATGCAAGCTTCGTCTTGACCTCTTCCCCTGGAAGTGTTTCTCAGTTTATAGCTACACAAGGCCCACTACCACATACTTATGAGGATTTCTGGGAAATGGTGATCCAGTACCGTTGCCCTGCTGTTGTGATGCTCACTAAGCTTGTCGACAATTATAAGATGGTAAAATGTGGAGATTATTTTCAAGCTGAAGATGGACCTAGAGAGTTAGGTAATATCTCTATTATTGGCAAATGGATGAAAACTTCTGAAACATCACTAGTACTGCGCCATTTGGAGGTGAAGCATAAAGAGGAAGAAGAGCCGCCCTTGTCTGTATTGCATATTCAGTATCCCGAATGGCCCGATCATGGAGTTCCCAAAGATACATATGCTGTGCGTGAAATTTTGAAAAGATTGTACCATGTACCACCAAGGCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGCAGGACTGGAACATACTGTGCAATTCACAACACAGTTCAGAGAATCCTTGCTGGTGATATGTCTGCCTTGGATCTTGGTAATACCATAGCTGTCTTCAGGTCACAGCGGATTGGAATGGTTCAGACACAGGACCAGTACTTTTTCTGCTATAAAGCTATTGTAGAGGAACTGGAAGACCTTGTTTCTCATCAGCAATGA 1020 0.4461 MAASSSGNSISTTSSSSFSPKPLEFSPDSPQRTSLTPDQVKYCSEALTIFREKLQTPHMIVQEFAHLQANRIAPSEMRRRCTVSLNDVNVSKNRYTDVLPFDKNRIVLESSSDYRPEAKGYVNASFVLTSSPGSVSQFIATQGPLPHTYEDFWEMVIQYRCPAVVMLTKLVDNYKMVKCGDYFQAEDGPRELGNISIIGKWMKTSETSLVLRHLEVKHKEEEEPPLSVLHIQYPEWPDHGVPKDTYAVREILKRLYHVPPRLGPIVVHCSAGIGRTGTYCAIHNTVQRILAGDMSALDLGNTIAVFRSQRIGMVQTQDQYFFCYKAIVEELEDLVSHQQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2538 339 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 33 332 IPR029021 -
Lele07g2538 339 Pfam Protein-tyrosine phosphatase 89 329 IPR000242 GO:0004725|GO:0006470
Lele07g2538 339 Gene3D Protein tyrosine phosphatase superfamily 34 338 IPR029021 -
Lele07g2538 339 FunFam Tyrosine-protein phosphatase non-receptor type 12 37 338 - -
Lele07g2538 339 Coils Coil 328 339 - -
Lele07g2538 339 SMART PTPc_3 59 332 IPR000242 GO:0004725|GO:0006470
Lele07g2538 339 SMART ptp_7 227 329 IPR003595 -
Lele07g2538 339 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 249 321 IPR000387 GO:0016311|GO:0016791
Lele07g2538 339 PRINTS Protein tyrosine phosphatase signature 226 243 IPR000242 GO:0004725|GO:0006470
Lele07g2538 339 PRINTS Protein tyrosine phosphatase signature 120 127 IPR000242 GO:0004725|GO:0006470
Lele07g2538 339 PRINTS Protein tyrosine phosphatase signature 264 282 IPR000242 GO:0004725|GO:0006470
Lele07g2538 339 PRINTS Protein tyrosine phosphatase signature 313 323 IPR000242 GO:0004725|GO:0006470
Lele07g2538 339 PRINTS Protein tyrosine phosphatase signature 297 312 IPR000242 GO:0004725|GO:0006470
Lele07g2538 339 PRINTS Protein tyrosine phosphatase signature 138 158 IPR000242 GO:0004725|GO:0006470
Lele07g2538 339 MobiDBLite consensus disorder prediction 1 37 - -
Lele07g2538 339 ProSitePatterns Tyrosine specific protein phosphatases active site. 267 277 IPR016130 GO:0016311|GO:0016791
Lele07g2538 339 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 37 333 - -
Lele07g2538 339 ProSiteProfiles PTP type protein phosphatase domain profile. 60 330 IPR000242 GO:0004725|GO:0006470
Lele07g2538 339 CDD PTPc_plant_PTP1 121 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2538 Lele-ChrLele07 30762208 30767672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2538 38 336 Protein tyrosine phosphatase (PTP) family AT1G71860 71.906 1.22e-167 468