Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2477 ATGGGTCGGAGAAAATTGGCACTGAAAACCCTGCAGAATAGGAATGCTCGCAGGGCACTGTTCGAGAGGAGGAAGAAGGGTTTATTGAAGAAAGCTTCTGAAATTTCCACCCTCTGTGGAATCGATGCCTGTGTGATCATCTTCCCTCCTCCAGATTCTGAAAACCCTAATAAAGTTGAAACCTTTCCCCAAGATCCCACTCAGGTGATTCGCAATATTCAACAGTATGACGCCACGAAGAATAAAAACCCCGAGAAACAGAGGAAGAACTACGATCTCGGTGAGTTCTTCAGTGATAAGAAGAAGCAGGTTGAAGCTGAGACTTGCAGAGTCCGTGAACAGAGATTGAAGATGACATGTCCAAATCCAACCTCGGATGACAGCTTCGACAACCTGGGAGAGGATCAACTGAGGATGTTTATTGCTGCGCTGGATTCTAAGATTCAAGAGTGTGATCAAACAATTGGGGTTTTGAATGCGAAGAAATCAGAGATGCCTTTGGTTCCAATGGGATTGGATTCGTTGGATGATAATTGTTTGGAGATGCCTGCTGTTACTGTAATTCCTCCTCATGATGTTTCAGACGAAACCTACCTGGACCTCGGTTTTATGAAGAACATGAGTGATGAAGCCAACGTTATCTCTGCTCCAATAAAACGCATTTTTGGTGATAATAACACCGACAGGATGGAATCTTACTCTCTTCAAGCCCAGATTCTTGGGTTAGGTTCAACTTGGGATGACAGTTTCAACAACCTAGGAGAGAATCAGGAGAGGATATTTATTGGTTCAACCTTGGACTCTGAGCTTCAAGAGGGTAGGTATCAAATGATTGACATGTTGAAAACAAAGTCCTCTGATGATGATCAGTGTATAAGGAAACCTGTAGTTCCTCTTCAAGATATTTCAAACCAGGGCAACTTGAGTTTCCTGCAGAATACAACAGAAGACAACAACCTTGTCATTGGTCATATGAATCCACTTGTTGATAATAGCCTGATAGATTCTTACTGTCTTCAAGATCAGGTGCTTCATTATGGATTGGAGAATATTGATTTAGATATGCTTTTGGGGTTTTAG 1080 0.4222 MGRRKLALKTLQNRNARRALFERRKKGLLKKASEISTLCGIDACVIIFPPPDSENPNKVETFPQDPTQVIRNIQQYDATKNKNPEKQRKNYDLGEFFSDKKKQVEAETCRVREQRLKMTCPNPTSDDSFDNLGEDQLRMFIAALDSKIQECDQTIGVLNAKKSEMPLVPMGLDSLDDNCLEMPAVTVIPPHDVSDETYLDLGFMKNMSDEANVISAPIKRIFGDNNTDRMESYSLQAQILGLGSTWDDSFNNLGENQERIFIGSTLDSELQEGRYQMIDMLKTKSSDDDQCIRKPVVPLQDISNQGNLSFLQNTTEDNNLVIGHMNPLVDNSLIDSYCLQDQVLHYGLENIDLDMLLGF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2477 359 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Lele07g2477 359 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 50 IPR002100 GO:0003677|GO:0046983
Lele07g2477 359 CDD MADS_SRF_like 2 53 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lele07g2477 359 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Lele07g2477 359 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele07g2477 359 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele07g2477 359 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Lele07g2477 359 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
Lele07g2477 359 SMART madsneu2 1 65 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2477 Lele-ChrLele07 30182451 30183530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2477 1 199 Type I MADS-box Gene Family AT5G55690 26.471 1.43e-14 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele07g2477 SRF-TF 5.8e-15 No_clan