Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2470 ATGCCTAAATCCCAAACCCTAAGTTCGGTTGACCTCTTCCACAGTGCTCTCCAATCTTTAAACTCGTCGCCTCCCTCTCCGTTAGTCTCTCTCCAGCCACACCACACCCCTCTTCCGCCGTCTTTCCCCCAATCCAAAATCATCCCCAAAACCCGCTTCTTGGTGGACGCATTCCGCCATGCCGGCGATTACTCTGTTTCCTACTTCCTTTCCCATTTCCACTCTGATCATTACACTGGTCTTCGCTCTAATTGGTCTAAAGGAATTGTTTATTGCTCAAACACTACTGCTCGACTTGTCGTTGAAGTGCTCAGGGTTCCTTCGAAGTTCGTAGTCCCTTTACGGCTCTGTGAGCCGGTTGAGATTGATGGCTGTGAAGTTACTCTTATTGATGCGAATCATTGCCCTGGGGCCGTGCAATTCTTGTTCAAAATTCCGGGTCTTGATGGAAAGTGCGAGAGGTATGTTCACACGGGAGATTTTCGGTTTTCTAAGGCAATGAAGTCAGAGCCTTTACTTGCTGCATATGTTGGTGCGGATGCCGTATTTTTGGACATAACCTATTGTGACCCAAAGTTTCAGTTTCCTAGCCAAGAAGAGTCTGTAGCCCATATAGTTGATGTAGTAGGGAGGGCTGAAAGTGAAAATGATTGTTCGAATAGAAATGTTTTGTTTCTTGTTGCTTCTTATGTTGTTGGGAAAGAGAAGATTCTGCTTGAACTTGCTCGTAGGTTTAAACGTAAAGTGCATGTGGATGCTAGAAAAATGGAGGTTTTGCAGGTTCTTGGGTATGAAGGCGGCCAAGAGTTTACAGATGATGACTCTCAAACTAATATTCATGTTGTTGGGTGGAATGTGTTAGGTGAGACATGGCCATACTTTAGGCCTAATTTTGTTAGAATGAAGGAGATTATGACTGAGAGAGGGTACTCTAAAGTTGTGGGTTTTGTTCCAACTGGATGGACTTATGAAGTGAAGCGCAATAAATTTACTGTGAATTCAAAGGATTCGTTTCATATTCACCTTGTACCATATAGTGAGCATTCTAACTATGATGAGCTCAGGGAATATGTGAAGTTTTTGAAACCAAAGCGTGTTGTTCCTACTGTAGGTGTAGATGTTGACAAAACTGACAGTAAACATGTGGAGAAAATTATGAAGCATTTTGCTGGGTTACTGGATGAGACAGCCAACAAGCGGGAATTTCTAAAGGGATTTCATCATACATCTACTGAAGGGGGCTTCAAGTTTGACAAGGATGATAATGATGGCGTGACGCCAGGGCAGAACGTGGAGACAGAAGTGACGTTATCCGACAAGGGAGATGATAAGAGTGTTAGTCCTGATATTATTTTAAATTTCTCTTCTACTCTTGAGGAACCCGACTTGCGAGATCCTGCATCACTAAAGGATGAGGAAACAGAGAGAATCAGTCAAGAGATGTCTAGTTGTTTGCCTACATGGGTGACTCAAGAACAAGTTCTAGAGCTTATCAGTGATGCAAGGGGCGATGTTGTTGAGGCTGTTTCTAATTTCTATGAACGTGAAGCTGAATTTCATGATCAAGTATTTTCCTGTCGAACCTCTGTTTCTTCATCCACATACTTATCAAATGAAAGTGATTTGCTTTCAAAACCACCCGTTGTTAGTAGTAAAACTTGCATGAGTGTTGACGTTTCACCGAGGCAAGACTTTAAGTTGTCCACCCTGAGGAATTCAGTGTCAAGTAGCATTTCTCCTTCTAAAAGGAAGAGAAATAGTGAAAGAAAGCTAAACAAGAAAGTAAAAGTCCATACAAAATCAGAATCAAGTGGGCCAAAACAGTCCAGGATAACAAAATTCTTCACTAAAGTCTTGCCTGACACCACCCAATCTGGTAATTTTGAAGCGGGTTCTGATCAAAGCCCTAAAGTTGAAGACTTGCCACAATTAGATGTTGAAAAAGCATACAAGGGTGAGATCGACCAGTTCATGCGGATAATAAATGGCAATGAATCATTAAAAAATTATGCTATCACAATAATTGAAAAGACAAAAGGAGATGTAAATAAGGCATTGGATATATATTATTGTAATCCTGGCAATTTTGATGAGAATGAAAAATCAGTTCAAGTTGAGTGCAAAGTGGACAACTCTTCAGAAAAGAAATCTGTGTCGCGGGAGTTGAGATCTGTGCAAAGCATGTCAAGAGAGAATGTAGATGCAACTCTTGTATCTCTACCACCTAAAGAATACAACCCTAAAGAACATGCATGTTGGAGAGATGGAGAGTCTGCTCCATATTTACATCTTGCACGAACCTTTAACCTTCTTGAGGATGAGAAAGGGAAGATAAAGGCTACTTCAATGTTATGCAATATGTTCAGAAGTTTGTTGGCCTTGTCTCCTGCTGAAGTACTTCCTGCTGTATATCTATGCACAAACAAAATTGCCGCAGACCATGAAAATAAGGAATTAAATATTGGTGGAACTCTGATTACTTCAGCGCTGGAAGAGGCATGTGGAACAACTCGATTGAAAATAAAGGAGATGTATAACAAATTTGGCGACCTTGGTGATGTTGCTCAAGAGTGTCGACAAACGCAGAGATTGCTTGCTCCTCCTAGACCCCTTCTGATTAAAGATGTTTTCTTAGCACTCGACAAGATAAGCTTACAAACAGGCAATGGAAGCACTCTTCGGAAGAAAAGCATAATTGTAAATCTCATGTGCTCTTGTCGGGAGAAGGAGATAAAGTTTCTTGTTCGTACTTTGGTCAGGAATTTACGGATTGGTGCAATGATTAGAACTGTTTTGCCTGCTCTGGCTCAAGCAGTCGTTATGAACTCATGCCCTACTTTACACCAAGATGGAACTGCAGAAAATTTGAAGGAGAAGCTTCAGGGCCTTTCGGCAGAAATCGTTGAAGCATATAACATACTCCCTAATTTGGATCTTCTAATACCATCTCTAATGAACAAAGGCACTAATTTTTGTGCTTCAAGTTTGTCAATGGTTCCAGGAATACCTATCAAGCCTATGCTTGCGAAGATCACCAATGGCATCCCCCAAGTTCTGAAGTTATTTCAAAATAAAGCATTTACTTGTGAATATAAATATGATGGCCAGCGGGCCCAGATTCACAAATTAAGTGATGGATCGATTCGTGTTTTCTCAAGAAATGGAGATGAAACAACATCAAGATTTCCAGATTTGATTGACACAATCAAGGAATTCTGCAAGCCTGCTTCGGTGACTTTTGTACTGGATGCAGAAATTGTGGGTATTGATAGGAAGAATGGATATAGGTATATGGCTTTCCAAGAGTTATCTTCACGTGGGAGAGGAAGTAAAGATGCCTCAGTTACTACAGAGAGCATGAAGGTGGACATTTGCCTGTTTGTCTTTGATGTCATGTTGGCTAATGGACAACAGCTTTTGGGTTTTCCTCTCCGTGAAAGGCAAAAATATCTGAAGGATTTGTTCTTTGACGAGAAACTTGGTTATTTTGAATATGCAAAGGAAACAACAATTGAAGCAGATAGTGCTTCAATAACCTGTGAAGCCACGGTAAGTAAGATAAACTCTTTCCTAGAAAGCGCAATCAATTCGTCAAGTGAAGGAATTATGGTGAAATCGTTGGATGTTGATGCTGGATATTCTCCATCAAAGCGTACAGACACATGGTTAAAGGTGAAGCGAGATTATGTGGATGGTTTAAATGATTCTCTTGATTTAGTACCAATTGGAGGTTGGTATGGAAACGGAAGGAAGGCTGGATGGTATAGCCCATTTCTCATGGCATGTTACAATCCCGAAACAGAGGAGTACCAAAGCGTATGCCGTGTGATGTCTGGTTTCTCAGATGACTTCTACGTAGTGATGAAAGAATTCTTTTCTGAGGGCAAAATATTGTCCAAAAAGCCGCCGTATTACCGAACAGCCGAGGTACCGGACATGTGGTTCAGTCCAGTACTTGTTTGGGAAATAAGAGGTGCTGAATTTACAGTATCTCCAGTTCACCAAGCTGCCATTGGTCTGGTTCATCCGTCTCGTGGTATATCAATCAGATTCCCCAGATTTGTTCGCAACGTGTTGGACAGGAACCCAGAAGAATGCTGCACAGCTGCTGATATAGCTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGTTGCAGCTGAAGATTGA 4170 0.4132 MPKSQTLSSVDLFHSALQSLNSSPPSPLVSLQPHHTPLPPSFPQSKIIPKTRFLVDAFRHAGDYSVSYFLSHFHSDHYTGLRSNWSKGIVYCSNTTARLVVEVLRVPSKFVVPLRLCEPVEIDGCEVTLIDANHCPGAVQFLFKIPGLDGKCERYVHTGDFRFSKAMKSEPLLAAYVGADAVFLDITYCDPKFQFPSQEESVAHIVDVVGRAESENDCSNRNVLFLVASYVVGKEKILLELARRFKRKVHVDARKMEVLQVLGYEGGQEFTDDDSQTNIHVVGWNVLGETWPYFRPNFVRMKEIMTERGYSKVVGFVPTGWTYEVKRNKFTVNSKDSFHIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGVDVDKTDSKHVEKIMKHFAGLLDETANKREFLKGFHHTSTEGGFKFDKDDNDGVTPGQNVETEVTLSDKGDDKSVSPDIILNFSSTLEEPDLRDPASLKDEETERISQEMSSCLPTWVTQEQVLELISDARGDVVEAVSNFYEREAEFHDQVFSCRTSVSSSTYLSNESDLLSKPPVVSSKTCMSVDVSPRQDFKLSTLRNSVSSSISPSKRKRNSERKLNKKVKVHTKSESSGPKQSRITKFFTKVLPDTTQSGNFEAGSDQSPKVEDLPQLDVEKAYKGEIDQFMRIINGNESLKNYAITIIEKTKGDVNKALDIYYCNPGNFDENEKSVQVECKVDNSSEKKSVSRELRSVQSMSRENVDATLVSLPPKEYNPKEHACWRDGESAPYLHLARTFNLLEDEKGKIKATSMLCNMFRSLLALSPAEVLPAVYLCTNKIAADHENKELNIGGTLITSALEEACGTTRLKIKEMYNKFGDLGDVAQECRQTQRLLAPPRPLLIKDVFLALDKISLQTGNGSTLRKKSIIVNLMCSCREKEIKFLVRTLVRNLRIGAMIRTVLPALAQAVVMNSCPTLHQDGTAENLKEKLQGLSAEIVEAYNILPNLDLLIPSLMNKGTNFCASSLSMVPGIPIKPMLAKITNGIPQVLKLFQNKAFTCEYKYDGQRAQIHKLSDGSIRVFSRNGDETTSRFPDLIDTIKEFCKPASVTFVLDAEIVGIDRKNGYRYMAFQELSSRGRGSKDASVTTESMKVDICLFVFDVMLANGQQLLGFPLRERQKYLKDLFFDEKLGYFEYAKETTIEADSASITCEATVSKINSFLESAINSSSEGIMVKSLDVDAGYSPSKRTDTWLKVKRDYVDGLNDSLDLVPIGGWYGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDDFYVVMKEFFSEGKILSKKPPYYRTAEVPDMWFSPVLVWEIRGAEFTVSPVHQAAIGLVHPSRGISIRFPRFVRNVLDRNPEECCTAADIAEMFHSQTRKMDVAAED 1389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2470 1389 FunFam DNA ligase 1231 1388 - -
Lele07g2470 1389 Gene3D - 48 370 IPR036866 -
Lele07g2470 1389 Gene3D - 739 1008 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele07g2470 1389 Pfam ATP dependent DNA ligase C terminal region 1252 1356 IPR012309 GO:0003910|GO:0006281|GO:0006310
Lele07g2470 1389 MobiDBLite consensus disorder prediction 414 444 - -
Lele07g2470 1389 Pfam DNA repair metallo-beta-lactamase 268 373 IPR011084 -
Lele07g2470 1389 Gene3D - 1231 1388 IPR012340 -
Lele07g2470 1389 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 818 1376 IPR000977 GO:0003910|GO:0005524|GO:0071897
Lele07g2470 1389 Coils Coil 953 973 - -
Lele07g2470 1389 Gene3D - 1016 1230 - -
Lele07g2470 1389 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 281 1381 - -
Lele07g2470 1389 FunFam DNA ligase 1035 1166 - -
Lele07g2470 1389 MobiDBLite consensus disorder prediction 570 608 - -
Lele07g2470 1389 CDD SNM1A-1C-like_MBL-fold 39 191 - -
Lele07g2470 1389 FunFam DNA ligase 194 348 - -
Lele07g2470 1389 Gene3D DNA ligase/mRNA capping enzyme 1035 1166 - -
Lele07g2470 1389 SUPERFAMILY Metallo-hydrolase/oxidoreductase 51 371 IPR036866 -
Lele07g2470 1389 Pfam DNA ligase N terminus 760 936 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele07g2470 1389 CDD Adenylation_DNA_ligase_I_Euk 997 1229 - -
Lele07g2470 1389 Pfam ATP dependent DNA ligase domain 1006 1226 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lele07g2470 1389 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 964 1228 - -
Lele07g2470 1389 SUPERFAMILY Nucleic acid-binding proteins 1235 1379 IPR012340 -
Lele07g2470 1389 Gene3D - 194 348 - -
Lele07g2470 1389 ProSiteProfiles ATP-dependent DNA ligase family profile. 1117 1264 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lele07g2470 1389 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1030 1038 IPR016059 GO:0003909
Lele07g2470 1389 CDD OBF_DNA_ligase_I 1235 1378 - -
Lele07g2470 1389 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 739 988 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2470 Lele-ChrLele07 30063602 30076366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2470 737 1379 Core DNA Replication Machinery Family AT1G08130 37.713 2.34e-159 498