Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2411 ATGGAGTCTGTGGTGGCAACAGTGTCTGGCTATCATGGAACAGAGCGATTCAACCTTATCAAGTTGATTTCACATGCTGGTGCCAATTATGTTGGTGCAATGTCACAATCGATCACGCATCTGATTTGCTGGCGATTTGAAGGAAAGAAATATGATCTTGCTCCGAAGTTCAGAACAGTTATAGTAAATCACCAGTGGATTGAAGACTGTTTAAAGCAAGGAAGGCGTGTTCCAGTGGGACCTTATAGATTGAGAAGTGGAGAAGAGGTGGGGCCAATATTGCTGCAAGTTCCACTTATTGTTCAGGCGAGTAGCTTGACTAAGAATAAAGTGCTTAAATATGGATCAGATGGCATTGTCTCGAAAAGTCAAACAACTGACATCAGTTCTGGAAATCCTGTCAGGGAAGATTCTTATTCAATGAACGAGCAGGAGGGGCCAATAACTTTTTCTTCCAGACAGTCAAGGTCAGAAAAAAGGAAGATCTCCAATAGTAATGGGGTGGCTACTTATTCTGGTACTTCACGTCACAGAAGAAGGCTAGTGAAAAGGAATGTTCAAGAAGTTTCAGCTCCTTTACTTGATTTGAACTCTGAGGAGTACCTTAGCAGAATGGATAGATTAAATGCTGATGCTGTAGCTTCCACTAGCCTTTCTGGTGGTGTCTCTAGTGATATTAGTTTAGAAAATAAAGAAGGATCAGATACTGACTCATATAATCAAAACATAGCTATCAATGCAGCATCAAATGGCACTGGACAAATCAATGATTCAAATAATTTATCAAGTTCAACAATTTCAACTTTATGCGTACAAGATGCCTTGCCTACTGCAGAGGAAATCTTAGTAGATGAGTGTTTCGAAAAGTCCGCAGATGGTATTCAGGATGGTCATGTGGCTGACTTGGCTACATCAACAGAGTTGTCATGTGTCATATGTTTGACGGAATTCATCTCAACGCGGGGGGTTTTACCTTGTGGACATAGGTTTTGTTATTCTTGTATCCAGAGTTGGGTTGATCACAGGACTACAATGGGAAAAATCTCAACGTGTCCCTTGTGCAAGTTAAGGTTTGACAGCATCATTAAATATGAGGATTTGGCCGTGGATCAAAAGATATATTCCCAAACAATCCCATGTGGCATTCCAATCTCAGATATTATTTTACTTATGGATCGAGAACAACCAAATTATGGTTCTGAGACAGGCGCTTGTGTTGTTTGCCGGGGGCGAGAACCTGAGGATCTGCTCATGGGTTGCCATCTTTGCCACATTCGACAAATCCATTCCTATTGCCTGGATCCTCCTTTATTGCCATGGACATGCAATCACTGTAAGGATCTTCGGATGCTTTATCATAATCATTCACATTAG 1374 0.4119 MESVVATVSGYHGTERFNLIKLISHAGANYVGAMSQSITHLICWRFEGKKYDLAPKFRTVIVNHQWIEDCLKQGRRVPVGPYRLRSGEEVGPILLQVPLIVQASSLTKNKVLKYGSDGIVSKSQTTDISSGNPVREDSYSMNEQEGPITFSSRQSRSEKRKISNSNGVATYSGTSRHRRRLVKRNVQEVSAPLLDLNSEEYLSRMDRLNADAVASTSLSGGVSSDISLENKEGSDTDSYNQNIAINAASNGTGQINDSNNLSSSTISTLCVQDALPTAEEILVDECFEKSADGIQDGHVADLATSTELSCVICLTEFISTRGVLPCGHRFCYSCIQSWVDHRTTMGKISTCPLCKLRFDSIIKYEDLAVDQKIYSQTIPCGIPISDIILLMDREQPNYGSETGACVVCRGREPEDLLMGCHLCHIRQIHSYCLDPPLLPWTCNHCKDLRMLYHNHSH 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2411 457 Pfam Ring finger domain 309 355 IPR001841 -
Lele07g2411 457 Gene3D BRCT domain 1 83 IPR036420 -
Lele07g2411 457 PANTHER F5A8.9 PROTEIN 125 454 - -
Lele07g2411 457 SUPERFAMILY BRCT domain 1 86 IPR036420 -
Lele07g2411 457 ProSitePatterns Zinc finger RING-type signature. 326 335 IPR017907 -
Lele07g2411 457 MobiDBLite consensus disorder prediction 122 179 - -
Lele07g2411 457 Pfam twin BRCT domain 4 66 IPR001357 -
Lele07g2411 457 SMART BRCT_7 1 74 IPR001357 -
Lele07g2411 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 391 456 IPR013083 -
Lele07g2411 457 ProSiteProfiles BRCT domain profile. 1 84 IPR001357 -
Lele07g2411 457 MobiDBLite consensus disorder prediction 217 237 - -
Lele07g2411 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 379 IPR013083 -
Lele07g2411 457 SUPERFAMILY RING/U-box 303 361 - -
Lele07g2411 457 SUPERFAMILY FYVE/PHD zinc finger 398 447 IPR011011 -
Lele07g2411 457 SMART ring_2 310 354 IPR001841 -
Lele07g2411 457 ProSiteProfiles Zinc finger RING-type profile. 310 355 IPR001841 -
Lele07g2411 457 MobiDBLite consensus disorder prediction 122 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2411 Lele-ChrLele07 29394547 29398580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2411 34 90 Core DNA Replication Machinery Family AT4G02110 44.828 2.02e-10 61.2