Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2341 ATGGCCACCTCCCAGCATCGCTGCGTTTTTGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGGCCTGTAGTATCATTCAGATTAGTCATCGACAGAGAAACTGGAAAACCAAAAGGTTATGGGTTCTGTGAGTACAAGGATGAAGAGACAGCTCTAAGTGCCCGTCGTAACCTTCAGGGTTATGAGATTAATGGGCGGCAGTTGCGTGTTGATTTTGCTGAAAATGACAAAGGTGCTGACAGAAATAGAGAACAGGGTCGCGGTGGGCCTGGATTGGCAGCAAATGTTGACCCTCAGAAACAAGTAGCTGGGCCAGTTGGTCAAGGGGAAGCTGGCCACAATCAACCTATTGGTCTTCATATTGCTATAACAGCTGCAACTGTCATGGCAGCAGCTCTAGGAGGGCCTCAATCTGGCATCCAGTCAAATCAAAATGGTTTGCAGGTTCAGTCAGGATTGGCACATGACCCTTTAACTCTGCATCTGGCCAGACTATCCAGGAATCAGCTGGTTGAGGTTATCTCTGACCTCAAGGCAATGGCTACACATAACAAGGAATTAGCTCGTCAGTTGTTACTTTCTAGACCGCAGTTGCCTAAGGCTCTTTTTCAGGCACAGGTGATGCTAGGAATGGTGACCCCACAAGTGTTACAAATGCCAAACCTGAGGCAAGTTGCAGGTGAAACCTCACAGCCTCCAGTAGATAAAAGCCAGCTAGGTCAGTCGGCAGTGCTTCAATCACTATCTGGGCTGCCTTCTCATTCTCATGCACAGATAAAGTTGCAGTCTGGCTTGATGCCCAATATTCAAGAAACTCAAGCCAGTGCTTTACATCATAATTCTTTGGTTCCTAATCAATTAGCTGCTGCACATTCAAAGCCTCCTTTGCAGCCTCGAATGCAGCTTCCACAGCATCCAAGCAACCTGGTGGAACAGATGGGCACATTGGCAGGGCATTCTAGTTCATCGCTTCCTTCTCTGCGGCCTCAGTCTCAATTCAGTTTGCCTGTTAGACCAACAAATCAACTGGTAACTTCAACTTCTCTGAATCAGCAAATGCATTTGCTACAACAATCAGGGAAGATTGGTAACTCAAGTGTAGGACAAAATATTCGGATGATTCGTCCAGATGCAGGCTTTCAGCCTGGCCTGTCCATATCATCAGGAGAGAAAACTAATGAGCCTTCAGAACCATTTAGCCGCCCTTCAAAGCTGATTAAATTGGATGATGGAAGGAGCTCTTCTTTCCCTGCAGGACTCAGAAATGTACCCGTTTCCAAGGGATCTTCCCAAGTTCTTGGAAGTGTGTCATTGCCTGTAAATGCAACTTCCAAATCAGAAGCACGATACCCTGAGCAACAAGCCTCTCAGGCTCAACTTCCATCTGACATGGAATCGGTATTACTGAAACAAGTGTTGAGTCTAACGCCGGAGCAATTGAGTTCCTTGCCACCGGAGCAGCAACAGCAGGTTTTACAGCTTCAGCAGGCTCTCCGGCGAGACCAGATCTAG 1542 0.4721 MATSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLAANVDPQKQVAGPVGQGEAGHNQPIGLHIAITAATVMAAALGGPQSGIQSNQNGLQVQSGLAHDPLTLHLARLSRNQLVEVISDLKAMATHNKELARQLLLSRPQLPKALFQAQVMLGMVTPQVLQMPNLRQVAGETSQPPVDKSQLGQSAVLQSLSGLPSHSHAQIKLQSGLMPNIQETQASALHHNSLVPNQLAAAHSKPPLQPRMQLPQHPSNLVEQMGTLAGHSSSSLPSLRPQSQFSLPVRPTNQLVTSTSLNQQMHLLQQSGKIGNSSVGQNIRMIRPDAGFQPGLSISSGEKTNEPSEPFSRPSKLIKLDDGRSSSFPAGLRNVPVSKGSSQVLGSVSLPVNATSKSEARYPEQQASQAQLPSDMESVLLKQVLSLTPEQLSSLPPEQQQQVLQLQQALRRDQI 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2341 513 Pfam Transcription termination and cleavage factor C-terminal 478 510 IPR026896 GO:0031124
Lele07g2341 513 MobiDBLite consensus disorder prediction 83 121 - -
Lele07g2341 513 FunFam Cleavage stimulating factor 64 1 116 - -
Lele07g2341 513 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Lele07g2341 513 Gene3D - 1 123 IPR012677 -
Lele07g2341 513 MobiDBLite consensus disorder prediction 388 422 - -
Lele07g2341 513 MobiDBLite consensus disorder prediction 395 409 - -
Lele07g2341 513 Gene3D - 154 230 - -
Lele07g2341 513 CDD RRM_CSTF2_CSTF2T 9 83 - -
Lele07g2341 513 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 511 - -
Lele07g2341 513 SMART rrm1_1 8 81 IPR000504 GO:0003723
Lele07g2341 513 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Lele07g2341 513 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lele07g2341 513 FunFam Cleavage stimulating factor 64 155 230 - -
Lele07g2341 513 Pfam Hinge domain of cleavage stimulation factor subunit 2 162 228 IPR025742 -
Lele07g2341 513 Gene3D - 471 512 IPR038192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2341 Lele-ChrLele07 28420360 28428527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2341 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.37e-07 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2315 05 38339860 38346712 Lele07g2341 07 28420360 28428527 hybridization
Lele06g2243 06 29051040 29053766 Lele07g2341 07 28420360 28428527 hybridization