Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele07g2265 | ATGGCAGATCTTGCTAAGTACGGGAATGCTGACCGTGATATCGAACAGGACTTATTAGGTGTAGAGATGGCTACCTTTCAGAAGTCTCTTGGCTTCATATCCTGTAAGAAAGGCTCAATTGCTGGACATGCTGTTTTCCAACGTTATTTGTGTCCTGAAAAGGATTATCTGTCTTTTTCACTTATTTACAACAACGGAAAGCGATCCCTTGACTTGATTTGCAAAGATAAAGCTGAGGCAGAAGTTTGGATTGCTGGCCTCAAATCACTGCTCTCTTCTGGTCAAGGTGGCCGGTCCAAAATTGATGGATGGAGTGATGGGGGCCTTTGTCTTGATGTAAACATACCTGCTCGTTGTCTTTAATTGACTTCAAATCGGCCAAGTGGAAGTTCAGTTGGTACTTCCCAAGATATTAGCTCTCCTGAAGTTTCTTTTAGTCGTAATTCAAATTCTTCTCTGAAGTCCTTTGGTCCTGAGAATACGTCTAATTCTGAAAGGTCACATTCACCATCTGATCCAACAAATATGCAAGTGAAAGGATCTGGTTCAGATGCTTTTCGTGTTAGTGTTTCAAGTGCCCCAAGTACATCTAGTCATGGGTCAGCACCAGATGACTGGGATGCTCTTGGGGATGTATACATATGGGGAGAGGTAATCTGTGAGAACATTGTGAAAGTTGGTGCTGATAGAAATGCCAACTATTTTAGCTCAAGGGCGGATTTGCTTCTACCTAGACCATTGGAGTCCAATGTAGTTTTAGATGTACATCATATAGCATGTGGTGTTAAACATGCTGCTCTAGTCACAAGGCAAGGTGAAATTTTTACATGGGGTGAAGAATCTGGAGGACGCCTTGGCCATGGTGTTGAGAAGAACGTGCTTCACCCCCATTTAGTTGAAGCATTGGCTTCTACAACTGTTGATTTTGTTGCCTGTGGTGAGTTCCATACCTGTGCTGTTACAATGGCTGGGGAATTATATACTTGGGGTGATGGTACTCATAATGCTGGTCTTCTTGGTCATGGCACTGATATTAGTCATTGGATACCAAAGAGAATTGCAGGCCCACTGGAGGGACTTCAGGTTTCTTTAGTCTCTTGTGGTCCATGGCACACAGCCTTGGTAACTTCAAGTGGGCAGCTTTTTACATTTGGTGATGGAACTTTTGGTGTCTTGGCCCATGGAGATAGGGAAAATGTTTCTTATCCTAAAGAAGTAGAATCCTTATCTGGGCTGAGAACAATAGCTGTTGCATGTGGTGTGTGGCATACTGCAGCTGTGGTAGAAGTTATAGTAACACAATCCAGTGCTAGTGTATCATCAGGTAAATTGTTTACCTGGGGTGATGGTGACAAAAATCGCCTTGGACATGGGGACAAGGAAGCCCGGCTGAAACCAACTTGTGTGCCTTCGCTTATTGACTACAATTTTTATAAAATTGCTTGTGGGCACAGCTTGACTGTTGGCTTGACGACATCAGGACATGTTTTTACAATGGGTAGCACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAGGTGCCTTGCTTGGTTGAAGACAAGCTTGCTGGAGAATCTGTTGAAGAAATTGCATGTGGTGCATATCATGTTGCAGTTTTAACATCAAAAAACGAAGTTTATACATGGGGAAAGGGTGCAAATGGGAGGTTGGGTCATGGAGATGTTGAAGACAGGAAAATACCAACTTTGGTAGAAGGTTTGAAGGATAGGCATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCAATATGCCTTCATAAATGGGTATCAGGTGCGGAACAGTCTCAGTGCTCTGCTTGTAGACAGGCATTTGGATTCACTCGAAAGAGGCACAATTGTTATAATTGTGGACTCGTACACTGCCATTCATGCAGTTCAAGGAAAGCACTAAGAGCAGCTTTGGCTCCTAATCCTGGCAAGCCATATCGAGTTTGTGATTCTTGTTATGCAAAACTAAGCAAGGTAGCAGAAACTGGCAGTAATAATAGGAAGAATGTTATGCCACGTTTGTCTGGTGAAAACAAGGACAGGTTAGATAAGGCTGAGATAAGAGCGTCCAAGGTGGTTCCCTCTAATATGGATTTGATAAAGCAGCTAGACAGCAAAGCAGCCAAACAGGGGAAGAAGGCTGATACATTTGCCCTAGTTCGCACCTTACAAGCACCTTCAATGCTGCAACTGAAGGATGTGGTCTTGTCTACTGCTGCTGATCTGAGACAAACAGATCCAAAACCAGTTCTTGCACCATCTGCAGTAAGTTCCCGATCTGTGTCCCCTTTCTCTAGACGGCCAAGCCCCCCTCGTTCTGCTACACCTATTCCAACCACATCTGGACTTTCTTTCTCCAAAAGCATTGCTGACAGCTTAAAGAAAACAAATGAACTCTTGAATCAAGAAGTGGTGAAGTTACGTTCTCAGGTTGAGAGCCTGAGGCAAAGATGTGAACGGCAAGATTTGGAACTTCAAAGGTCAACAAAGAAAACTCAGGAAGCTATGGCACTTGGTGCTGGGGAGTCTGCTAAATGTAAAGCCGCAAAAGAAGTTATAAAGTCACTTACAGCACAGCTCAAAGATCTGGCTGAGAGGCTCCCTCCTGGAGCTAATGATGCTGAGAGCATAACACCAACTTACCTACCAAATGGTTTGGAGTTAAATGGCATCCACTATCCTGACTCAAATGGGGAGCGCCTCTCCCAAGCTGAGTCAATCATTGCCTCTAGCTTGGATTCTGTAGGACTTGAATCATCTCTGTCAAATAGACTTGAGGGAAATTTATCTGGAGCATATGGAACTAATCTTTACCAGCAAAATCGGCAGTTTGTGACCTCCAATGGGATCAACGAACCCTCAGACGCTAAATTGCCAAATGGTGGCATGACTCCCACAAGCAACCCTATGTCAGATACTGTTGGTAGGGATTCAGGACATTTAGAAGATGGTGAGGGTGGTTTGAGATCAAAGGATGGTGTACTGGCTGCGAACAGTAATCAAATTGAGGCAGAATGGATTGAACAGTATGAACCCGGTGTGTATATAACACTCATGGCCCTTAAGGATGGAACACGAGATCTAAAACGAGTGCGCTTCAGCCGGAGAAGATTTGGAGAGCATCAGGCAGAAACATGGTGGTCAGAGAATCGCGAGAAGGTATACAAAAGGTACAATGTTCTCAGCACTGACAATCGTCAGGCCAAGCAACTCGGAAAGTAG | 3243 | 0.4409 | MADLAKYGNADRDIEQDLLGVEMATFQKSLGFISCKKGSIAGHAVFQRYLCPEKDYLSFSLIYNNGKRSLDLICKDKAEAEVWIAGLKSLLSSGQGGRSKIDGWSDGGLCLDVNIPARCLXLTSNRPSGSSVGTSQDISSPEVSFSRNSNSSLKSFGPENTSNSERSHSPSDPTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDWDALGDVYIWGEVICENIVKVGADRNANYFSSRADLLLPRPLESNVVLDVHHIACGVKHAALVTRQGEIFTWGEESGGRLGHGVEKNVLHPHLVEALASTTVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDISHWIPKRIAGPLEGLQVSLVSCGPWHTALVTSSGQLFTFGDGTFGVLAHGDRENVSYPKEVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPSLIDYNFYKIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPQSDGKVPCLVEDKLAGESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKIPTLVEGLKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCYAKLSKVAETGSNNRKNVMPRLSGENKDRLDKAEIRASKVVPSNMDLIKQLDSKAAKQGKKADTFALVRTLQAPSMLQLKDVVLSTAADLRQTDPKPVLAPSAVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVVKLRSQVESLRQRCERQDLELQRSTKKTQEAMALGAGESAKCKAAKEVIKSLTAQLKDLAERLPPGANDAESITPTYLPNGLELNGIHYPDSNGERLSQAESIIASSLDSVGLESSLSNRLEGNLSGAYGTNLYQQNRQFVTSNGINEPSDAKLPNGGMTPTSNPMSDTVGRDSGHLEDGEGGLRSKDGVLAANSNQIEAEWIEQYEPGVYITLMALKDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYKRYNVLSTDNRQAKQLGK | 1080 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele07g2265 | 1080 | Gene3D | - | 130 | 431 | IPR009091 | - | |
| Lele07g2265 | 1080 | MobiDBLite | consensus disorder prediction | 754 | 789 | - | - | |
| Lele07g2265 | 1080 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 324 | 378 | IPR000408 | - | |
| Lele07g2265 | 1080 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 612 | 670 | IPR013083 | - | |
| Lele07g2265 | 1080 | SUPERFAMILY | FYVE/PHD zinc finger | 598 | 670 | IPR011011 | - | |
| Lele07g2265 | 1080 | MobiDBLite | consensus disorder prediction | 953 | 999 | - | - | |
| Lele07g2265 | 1080 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 181 | 431 | - | - | |
| Lele07g2265 | 1080 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 365 | 375 | IPR000408 | - | |
| Lele07g2265 | 1080 | MobiDBLite | consensus disorder prediction | 130 | 202 | - | - | |
| Lele07g2265 | 1080 | ProSiteProfiles | BRX domain profile. | 1011 | 1066 | IPR013591 | - | |
| Lele07g2265 | 1080 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1010 | 1065 | IPR013591 | - | |
| Lele07g2265 | 1080 | Coils | Coil | 797 | 838 | - | - | |
| Lele07g2265 | 1080 | ProSiteProfiles | PH domain profile. | 1 | 92 | IPR001849 | - | |
| Lele07g2265 | 1080 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 417 | 427 | IPR000408 | - | |
| Lele07g2265 | 1080 | SUPERFAMILY | RCC1/BLIP-II | 209 | 599 | IPR009091 | - | |
| Lele07g2265 | 1080 | SMART | fyve_4 | 596 | 665 | IPR000306 | GO:0046872 | |
| Lele07g2265 | 1080 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 432 | 603 | - | - | |
| Lele07g2265 | 1080 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 494 | 545 | IPR000408 | - | |
| Lele07g2265 | 1080 | CDD | FYVE_like_SF | 607 | 660 | - | - | |
| Lele07g2265 | 1080 | Gene3D | - | 432 | 611 | IPR009091 | - | |
| Lele07g2265 | 1080 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 442 | 493 | IPR000408 | - | |
| Lele07g2265 | 1080 | PRINTS | Chromosome condensation regulator RCC1 signature | 365 | 381 | IPR000408 | - | |
| Lele07g2265 | 1080 | PRINTS | Chromosome condensation regulator RCC1 signature | 541 | 562 | IPR000408 | - | |
| Lele07g2265 | 1080 | PRINTS | Chromosome condensation regulator RCC1 signature | 274 | 290 | IPR000408 | - | |
| Lele07g2265 | 1080 | PRINTS | Chromosome condensation regulator RCC1 signature | 381 | 395 | IPR000408 | - | |
| Lele07g2265 | 1080 | PRINTS | Chromosome condensation regulator RCC1 signature | 324 | 340 | IPR000408 | - | |
| Lele07g2265 | 1080 | PRINTS | Chromosome condensation regulator RCC1 signature | 483 | 501 | IPR000408 | - | |
| Lele07g2265 | 1080 | Pfam | Transcription factor BRX N-terminal domain | 849 | 882 | IPR027988 | - | |
| Lele07g2265 | 1080 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 602 | 664 | IPR017455 | - | |
| Lele07g2265 | 1080 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 379 | 430 | IPR000408 | - | |
| Lele07g2265 | 1080 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 324 | 374 | IPR000408 | - | |
| Lele07g2265 | 1080 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 493 | 542 | IPR000408 | - | |
| Lele07g2265 | 1080 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 272 | 320 | IPR000408 | - | |
| Lele07g2265 | 1080 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 441 | 488 | IPR000408 | - | |
| Lele07g2265 | 1080 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 547 | 594 | IPR000408 | - | |
| Lele07g2265 | 1080 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 378 | 427 | IPR000408 | - | |
| Lele07g2265 | 1080 | Coils | Coil | 853 | 873 | - | - | |
| Lele07g2265 | 1080 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 546 | 597 | IPR000408 | - | |
| Lele07g2265 | 1080 | SUPERFAMILY | PH domain-like | 44 | 91 | - | - | |
| Lele07g2265 | 1080 | Gene3D | - | 41 | 97 | IPR011993 | - | |
| Lele07g2265 | 1080 | FunFam | Putative E3 ubiquitin-protein ligase HERC1 | 604 | 672 | - | - | |
| Lele07g2265 | 1080 | MobiDBLite | consensus disorder prediction | 953 | 981 | - | - | |
| Lele07g2265 | 1080 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 272 | 323 | IPR000408 | - | |
| Lele07g2265 | 1080 | Pfam | FYVE zinc finger | 598 | 664 | IPR000306 | GO:0046872 | |
| Lele07g2265 | 1080 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 54 | 868 | - | - | |
| Lele07g2265 | 1080 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 258 | 268 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele07g2265 | Lele-ChrLele07 | 22080683 | 22088281 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele07g2265 | 1012 | 1077 | Major Intrinsic Protein MIP | AT1G31880 | 53.030 | 4.53e-14 | 73.2 |