LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele07g2257	ATGGCAGAGCTTGGGTATCATAGAAGCGCCAAAAAATGCAAAGAGAAATTTGAGAACGTGTACAAGTACCACAAAAGAACAAAAGATGGCCGAACTGGGAAATCTGAAGGCAAAACGTATCGTTTCTTCGATCAATTAGAAGCTCTTGATCATCAAAACCATCCTCCTCTTCTTACAGTTCAATCCTCGTCATCACAGCCACCGCAAGCACCACCGTCGTTGTTATTTGCAATACCTGCAACACCAGTTTCAGTGGTGGCGACGACTCCATTGTCATCCACAAATGTTAATCATTCTCCCCATCTCTCTACTGGTCCATCAACGATCACTCCACAACCCAATGTTCTCACTCCACTTATCAACCTCACATCTTCCACAATTAATAATCCTCCTCCCTACAATATTTTCCCACCACCGTCAACATCAACCGCAAACCATATCCAATCTTCTTTTCAGACTGACCTCTTGTCCAATTGTCCGTCTTCCTCGACCTCCTCCGATGAATCAATAGAGCAGCGGCAACGGCGAAAGCGGAAGTGGAAGGACTTCTTTGGAAGGCTGATGAAGGAGGTTATAGAGAAGCAGGAGCAAATGCAGAAGAGGTTATTGGAGGCCATTGAGAAGCGAGAACACGAGAGGATGGTTCGTGAAGAAGCTTGGAGAATGCAGGAGATGGAGAGGATTAATCGAGAGCGTGAAATATTGGCACACGAGAGATACATAGCGGCTGCCAAGGACGCTGCTGTAGTGGCATTATTGCAGAAGATAGCCGAACAGCAAAATCTCGGCCTCCCGCTGAATAATATCAACATTTCTCCACCTCCTCCACCACCACCGTCGGCACAACCGGCTCCGGCTCCTCCAGTCGCTCAGCCACAACCAGCCTCAGTCACAAACATGGAGATTCTAGCAACTGATAATAATAACCATAAAGGGGAGAATTTGGTGACACCGAGTTCGTCGAGGTGGCCGAAAGTGGAGGTTCAGGCTTTGGTAAAGCTACGAAAGAGCATGGACGAGAAGTACCAAGACAATGGGCCAAAAGGACAGTTGTGGGAGGAGATCTCGGCGGCGATGAGGAGGCTCGGGTACAACAGAAACGCCAAGAGGTGCAAGGAGAAGTGGGAGAACATAAACAAGTACTTCAAGAAGGTGAAGGAAAGCAACAAGAAGAGGCCGCAAGATGGTAAGACCTGTCCGTATTTCCACCAGCTAGATGCTCTATACAGGGAGAAGAACAAGCTTGAGATGATCAATACTCCTCCTCCGCCGTCGTCAGCCACCACTGCGGATCATAATCCGGCAGATAATAATGGCACAATACCGACATTAGCGCCGCTGATGGAGGATGAGGAAGAAGAAGACATGGACGAAGAGAAGGATATTGAAGACGAAGATGACGAAGAAAAAGAGGAAGGAGGTGGCAATTATGAGATAGTAGCAAGCAAGCCAGCTTCAGTAAGGCAGCTAAGTGAGAGTGAAATGAGGAAATGA	1494	0.4766	MAELGYHRSAKKCKEKFENVYKYHKRTKDGRTGKSEGKTYRFFDQLEALDHQNHPPLLTVQSSSSQPPQAPPSLLFAIPATPVSVVATTPLSSTNVNHSPHLSTGPSTITPQPNVLTPLINLTSSTINNPPPYNIFPPPSTSTANHIQSSFQTDLLSNCPSSSTSSDESIEQRQRRKRKWKDFFGRLMKEVIEKQEQMQKRLLEAIEKREHERMVREEAWRMQEMERINREREILAHERYIAAAKDAAVVALLQKIAEQQNLGLPLNNINISPPPPPPPSAQPAPAPPVAQPQPASVTNMEILATDNNNHKGENLVTPSSSRWPKVEVQALVKLRKSMDEKYQDNGPKGQLWEEISAAMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKRPQDGKTCPYFHQLDALYREKNKLEMINTPPPPSSATTADHNPADNNGTIPTLAPLMEDEEEEDMDEEKDIEDEDDEEKEEGGGNYEIVASKPASVRQLSESEMRK	497

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele07g2257	497	CDD	GT1	321	386	-	-
	Lele07g2257	497	MobiDBLite	consensus disorder prediction	95	115	-	-
	Lele07g2257	497	Coils	Coil	448	468	-	-
	Lele07g2257	497	PANTHER	FI21293P1	1	467	-	-
	Lele07g2257	497	MobiDBLite	consensus disorder prediction	447	473	-	-
	Lele07g2257	497	MobiDBLite	consensus disorder prediction	419	440	-	-
	Lele07g2257	497	ProSiteProfiles	Myb-like domain profile.	321	379	IPR001005	-
	Lele07g2257	497	MobiDBLite	consensus disorder prediction	154	174	-	-
	Lele07g2257	497	Pfam	Myb/SANT-like DNA-binding domain	321	408	IPR044822	-
	Lele07g2257	497	Pfam	Myb/SANT-like DNA-binding domain	1	49	IPR044822	-
	Lele07g2257	497	SMART	sant	319	381	IPR001005	-
	Lele07g2257	497	MobiDBLite	consensus disorder prediction	418	497	-	-
	Lele07g2257	497	FunFam	Trihelix transcription factor GT-2	323	384	-	-
	Lele07g2257	497	Coils	Coil	188	212	-	-
	Lele07g2257	497	Gene3D	-	1	26	-	-
	Lele07g2257	497	Gene3D	-	323	384	-	-
	Lele07g2257	497	MobiDBLite	consensus disorder prediction	154	168	-	-
	Lele07g2257	497	MobiDBLite	consensus disorder prediction	269	292	-	-
	Lele07g2257	497	MobiDBLite	consensus disorder prediction	267	294	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele07g2257	Lele-ChrLele07	19817847	19819412	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele07g2257	1	423	Trihelix Transcription Factor Family	AT1G76890	48.107	2.16e-119	360

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Trihelix	Lele07g2257		Myb_DNA-bind_4	3.4e-22	CL0123