Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2194 ATGGGAAGGGGTAGGGTTGAACTGAGGCGTATTGAGAACAAAATCAGCCGTCAAGTGACGTTTTCAAAGAGGCGAAGTGGCCTGTTTAAGAAAGCTGAAGAAATCTCTGTGCTCTGTGATGCTCAAGTTGCTTTGATTATCTTCTCCACCAAAGGCAAGCTCTTTGAGTTCTCCTCTGATTCCAGCTTGGATGGCGTTCTGGAACGATATGAGAGACAAACGCACACAGAACAACTTGCTGAAGCTAACACCGAATTTCAGGGAAACTTGTCCTTGGAGTTCTACAAACTCACCACCAAAGCTAAAATCTTGGAGAAGAACATAAGGAACTATGGAGGACATGATCTTGATATCTTGAGTTTAAGAGAGCTTCATAACTTAGAGACACAGATCGACACATCGATAAAGCGTATTCGAACAAGAAAGAACCAACTGATGAATGAATCCATCTCGGAGCATCAGAAGAAGGCAAGGGCATTGCAGGAGCAAAACAACATATTAGCAAAGAAGGTCAAAGAGAAAGAGAAGTCACTGACTGAAAATCCACAGCAGGAGAAGTACACACAAGGACAAAATTTATCTGGCTTCAATGTTCCAGATGCACCACAGCTACAACTTCCAACTTTAACTCTGGGTGCCAGTTTACAAGCAAGAGGAGCAGAAGAGGAAGAAGAGATGGAAGCTGATCAGACTGCACCCAGAAGCAACACTATCATGCCACCATGGATGTTGCGTCACTTGATCAGATAG 750 0.436 MGRGRVELRRIENKISRQVTFSKRRSGLFKKAEEISVLCDAQVALIIFSTKGKLFEFSSDSSLDGVLERYERQTHTEQLAEANTEFQGNLSLEFYKLTTKAKILEKNIRNYGGHDLDILSLRELHNLETQIDTSIKRIRTRKNQLMNESISEHQKKARALQEQNNILAKKVKEKEKSLTENPQQEKYTQGQNLSGFNVPDAPQLQLPTLTLGASLQARGAEEEEEMEADQTAPRSNTIMPPWMLRHLIR 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2194 249 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele07g2194 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele07g2194 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele07g2194 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele07g2194 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Lele07g2194 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele07g2194 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele07g2194 249 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Lele07g2194 249 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Lele07g2194 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele07g2194 249 MobiDBLite consensus disorder prediction 174 193 - -
Lele07g2194 249 Coils Coil 143 177 - -
Lele07g2194 249 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lele07g2194 249 MobiDBLite consensus disorder prediction 216 241 - -
Lele07g2194 249 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Lele07g2194 249 Pfam K-box region 88 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele07g2194 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2194 Lele-ChrLele07 16116222 16127946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2194 1 238 MADS-box Gene Family AT1G26310 49.799 8.19e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele07g2194 K-box 6.3e-21 No_clan