Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2130 ATGGAGGAGTACATTCTTCAGAATCCTTCAGATGTGATTGGTGAAGCTAGAGATCAAATTGAATACCACCTCACAGTACTTAAAAATGAAGTAGAAGATGAAGAAGATTCTGTTAAAGAAGTTGAACAAAAGCAGCTAGAAGAAACAACTCTTAATGGGAACGATAACAAATCAGGATTTGTTAAATCAAATGAGAAGAAGAGGTATCTGAATGTTGCACCTGGTGAATCAACTCCATTGCCCTGCTATCAGTCACAAAAGAAGTGCAAGCAAGTGGGATCTTCTGGTCTGAAATTAGAATCTGGACCTTCAGATTCGGAGCTCAATAATGACTCTGTCACTGGAAGTTCTGGGAGTTCCAAAGAAGGTACTGGAAGTTCTGGAAAACGAAGGCGCAGCAGATGGGAACCACAGTCTGTGGATGATGGTGTAAAAGACTGTCAGACTCGCAAGAGGAGGAAAACCAGGTGGTCCGATGAGGACACTCAACTAAAAATGCTGGGACCACTTCAGCTGCCTGATTTCAAGAAAGATTTTCTTGTTGGATATGGGAATGATCCTGAAATTCAAGGGTTGAAAAATGAGCTTTTTGAGATTAATAGAAGGTTGCATGGACCTCTTCATGATGATAGGCTTGAGGAGGAAAGATCTCCTTCACCAGAACCAATATATGATGATGACCTTGGCATCAGAATAAATACAAGAGAAGTAAGACTTCAACAGAAACTTGTCCAGAAACGTCAAAATATCATATCAAAATTGATCAAATCAAACCGAAGCTTTAGGCCTCCTGATTACAAGCCTCCAAAACTCTTCAAAAGACTTTACATCCCAATGAAAGAATATCCAGAGTACAATTTTGTTGGCCTTATAATTGGGCCTCGTGGAAACACGCTGAAGAGAATGGAAAATGAAACTGGGGCCAAGATTCATATAAGAGGAAAAGGATGCTCAAAAACACCCGACAAATCTGCCTCTTCTAAAGAGGACTTACATGTGTATATAGAAGCAGACAACAAAAATTCTCTGGATGCGGCAGTTGCCATGGTTGAAAAATTGCTAATCCCAGTCGAAGGAAGAAATGATCTCAAGGAGGCTCAATTAAAGGAGCTGGCCATGCTGAATGGAACAGTTAGGGTTGAAAATGTGTGCTATGTTTGTGGTGATGAGGGACATCTGTCATATGCCTGCCCTGACCTTCAATCAACTTTCGAAGTGAACTCATTCTATACATGTTTTAGTGCCAGTCCTTTGGATGTGCTGTCTCCACAGAATGAATCTGTGCAGGGTTCCGGGTTTGGTTTTAGTTTCAGTTCAACACAGAGTAGCCAACGGATGCCTGAAAATAAATCATTGATGAATAATCTTTATGTTGGCAATCTTCCTCAAGCGTTTGATGATAATAGATTGTCTGAGCTGTTTTCTCCATTTGGTAAGATCCTCGAAGTAAAAGCAATCAAGGATCGAACAATTGGAATTTGTAGAGGTTATGGATTTGTCAAGTTTGAAGATCCCACAGATGCACAAGTAGCTGTGACGCATATGAACGGTTTTAAAATGGATGGTAGGGTTTTGAAGGTAAGGATAGCCAGGGTTTTATCAAATACTGAATCTTCAAGCTTGAACCACCTTCCACAGAGCTCTGGTCCTGCAGGTATATCCCAAACTGGGCCATTACATTTTAAGCTGCCAGAACATCCAACTTTGCTTCACAACAGCAGTGGCATGAACCTGTTTTCACCCACTATGAACTCACTGCATTGTGATCTTTGGAAGGATAGAAGCTTTTCTCCTCCAAGCTACTGCTCAAGCACTTCTGATTTTTGTAATTCTGGCAAAATGCATTTTTCATGCAACTCTTCAGATCAAAGTGTTTTCTTATCTGGTAGTTCAATTTCACAGAGTCCTGGCTCCCAATATCAGTCATATTTTATGACGCCGCCACTCCATAAAGCTGCACTGCTCTATCCTGATCACAGATTAGAAGATACGGATTCTTTCCCTTCTTCATTGCAGAGAAGGTATTACAGGGCACTTAATTGA 2043 0.4077 MEEYILQNPSDVIGEARDQIEYHLTVLKNEVEDEEDSVKEVEQKQLEETTLNGNDNKSGFVKSNEKKRYLNVAPGESTPLPCYQSQKKCKQVGSSGLKLESGPSDSELNNDSVTGSSGSSKEGTGSSGKRRRSRWEPQSVDDGVKDCQTRKRRKTRWSDEDTQLKMLGPLQLPDFKKDFLVGYGNDPEIQGLKNELFEINRRLHGPLHDDRLEEERSPSPEPIYDDDLGIRINTREVRLQQKLVQKRQNIISKLIKSNRSFRPPDYKPPKLFKRLYIPMKEYPEYNFVGLIIGPRGNTLKRMENETGAKIHIRGKGCSKTPDKSASSKEDLHVYIEADNKNSLDAAVAMVEKLLIPVEGRNDLKEAQLKELAMLNGTVRVENVCYVCGDEGHLSYACPDLQSTFEVNSFYTCFSASPLDVLSPQNESVQGSGFGFSFSSTQSSQRMPENKSLMNNLYVGNLPQAFDDNRLSELFSPFGKILEVKAIKDRTIGICRGYGFVKFEDPTDAQVAVTHMNGFKMDGRVLKVRIARVLSNTESSSLNHLPQSSGPAGISQTGPLHFKLPEHPTLLHNSSGMNLFSPTMNSLHCDLWKDRSFSPPSYCSSTSDFCNSGKMHFSCNSSDQSVFLSGSSISQSPGSQYQSYFMTPPLHKAALLYPDHRLEDTDSFPSSLQRRYYRALN 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2130 680 CDD SF1_like-KH 273 379 - -
Lele07g2130 680 Pfam Splicing factor 1 helix-hairpin domain 153 267 IPR032570 -
Lele07g2130 680 MobiDBLite consensus disorder prediction 93 124 - -
Lele07g2130 680 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 456 526 IPR000504 GO:0003723
Lele07g2130 680 Pfam KH domain 286 351 IPR004088 GO:0003723
Lele07g2130 680 PANTHER RNA-BINDING PROTEIN RELATED 111 568 IPR045071 -
Lele07g2130 680 SUPERFAMILY Retrovirus zinc finger-like domains 381 402 IPR036875 GO:0003676|GO:0008270
Lele07g2130 680 ProSiteProfiles Type-1 KH domain profile. 286 350 - -
Lele07g2130 680 ProSiteProfiles Zinc finger CCHC-type profile. 384 399 IPR001878 GO:0003676|GO:0008270
Lele07g2130 680 MobiDBLite consensus disorder prediction 31 46 - -
Lele07g2130 680 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 271 384 IPR036612 GO:0003723
Lele07g2130 680 SMART kh_6 271 355 IPR004087 GO:0003676
Lele07g2130 680 MobiDBLite consensus disorder prediction 31 66 - -
Lele07g2130 680 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 454 532 IPR000504 GO:0003723
Lele07g2130 680 MobiDBLite consensus disorder prediction 125 160 - -
Lele07g2130 680 MobiDBLite consensus disorder prediction 93 160 - -
Lele07g2130 680 Gene3D - 436 539 IPR012677 -
Lele07g2130 680 SMART rrm1_1 455 528 IPR000504 GO:0003723
Lele07g2130 680 Gene3D K Homology domain, type 1 268 383 IPR036612 GO:0003723
Lele07g2130 680 Coils Coil 24 44 - -
Lele07g2130 680 SMART c2hcfinal6 383 399 IPR001878 GO:0003676|GO:0008270
Lele07g2130 680 Gene3D - 187 264 - -
Lele07g2130 680 SUPERFAMILY RNA-binding domain, RBD 437 534 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2130 Lele-ChrLele07 14851101 14853143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2130 444 547 Eukaryotic Initiation Factors Gene Family AT1G49760 32.381 2.55e-06 48.9