Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2125 ATGCAAAAAGCGAATCAGGCAAAACAAATCTCATACGGAAGTTTCTGGAGAAAAGACTTATTTCTATCTATGGCTCTGACGACGCTGGATCATAAAGGCGAGCCCACGGCCGGTGAGTCTCAGAGATCTATTCCGACGCCCTTTTTAACGAAAACTTATCAACTTGTTGACGATCATACCATAGACGATGTCATATCGTGGAACGAAGATGGATCCAGTTTCATCGTTTGGAATCCTACGGTTTTCGCCAGAGATTTGCTTCCAAAATATTTTAAGCACAACAATTTCTCTAGCTTCGTCCGCCAACTTAACACCTATGGATTCAGAAAAGTAGTACCGGATCGGTGGGAATTCACGAACGAGTGTTTTTGCAGAGGCAAGAAACAACTTCTGGGCGAAATTCAGCGTCGGAAAATCTCATCGCCTTCGCCACCACCGGCAGGTGCAACTGTGGTAGCGTCAGTTCCGGCGCCGGCGCCATTGATGGCAATACCAACGGCGAAGCCTATCATATCGCCTTCAAACTCAGGGGAAGAACAAATCGTTACGTCGAATTCATCGCCGACCGGAGCTCCGGCGGAACTCTTAAGCGAGAACGAGAGGCTGAGAAAAGAAAACTTTCAGCTGAGCAAGCAATTAGCAGAGATGAGATCTCTGTGTAACAACATATTCAATCTAATGTCAAAGTACGCAAATAACCAAAATAGCAGTTTGCAAGGTAGAGCGAGTGACTTCGCCGTGAAACCGCTCGATTTGATGCCGGTTGCGAATAACTCCGGTAACATGGACGCGGTGGCGATGGTGGAAGACGAGATGAATCCGAAGCTGTTTGGGGTGGCGATCGGTGCGAAGCGATCACGAGAAGTAGGAGGCGATCCGGTGCTGAGCTTGTACAGAGCGGCGCCCACAGAGATGAGATCAGAGCCGTTGGGTTGCCAGAGGCGTCGGGATAATCAGGAAGCGCCGTGGCTGAATCAGTGCCACAACGCGAATCAGAGAGTTTGTAATTAA 1011 0.4876 MQKANQAKQISYGSFWRKDLFLSMALTTLDHKGEPTAGESQRSIPTPFLTKTYQLVDDHTIDDVISWNEDGSSFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFTNECFCRGKKQLLGEIQRRKISSPSPPPAGATVVASVPAPAPLMAIPTAKPIISPSNSGEEQIVTSNSSPTGAPAELLSENERLRKENFQLSKQLAEMRSLCNNIFNLMSKYANNQNSSLQGRASDFAVKPLDLMPVANNSGNMDAVAMVEDEMNPKLFGVAIGAKRSREVGGDPVLSLYRAAPTEMRSEPLGCQRRRDNQEAPWLNQCHNANQRVCN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2125 336 Coils Coil 199 219 - -
Lele07g2125 336 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele07g2125 336 PRINTS Heat shock factor (HSF) domain signature 99 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele07g2125 336 PRINTS Heat shock factor (HSF) domain signature 48 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele07g2125 336 SUPERFAMILY "Winged helix" DNA-binding domain 45 137 IPR036390 -
Lele07g2125 336 Pfam HSF-type DNA-binding 48 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele07g2125 336 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 37 285 IPR027725 -
Lele07g2125 336 FunFam Heat stress transcription factor B-4 40 138 - -
Lele07g2125 336 Gene3D - 40 138 IPR036388 -
Lele07g2125 336 ProSitePatterns HSF-type DNA-binding domain signature. 87 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele07g2125 336 SMART hsfneu3 44 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2125 Lele-ChrLele07 14803410 14804793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2125 40 336 HSF AT5G62020 47.436 2.15e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele07g2125 HSF_DNA-bind 6.6e-32 CL0123