Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2097 ATGATGTTAGAGAGGAGGAGGAGGAGCTTCCAAAGCTTTGAGATGGGAAAAGGGAAGATTGAGATAAAGAGGATTGAAGATACAAGTAGCAGACAAGTGACATTTTCAAAGAGAAGAAATGGGCTAATGAAGAAAGCCTACGAGCTATCGGTGCTATGTGACGCCCAAGTAGCTGTCATAGTCTTTTCACAAAAAGGCAAACTCTATGAATTCTTCAGTTCTGAAAACATTATTGACCGATATGTTAACCATGGCAAAAATGTTCATACCAATACGTTTGAAGAGGAACGACTTATCCAGAGCCTGAATTCTAACTGTGAAAGCATGGCAAGGAAGATGGAGCTTCTAGAACTTTCACAAAGGAAGCTATTGGAACATCATGGCTTGAGTTATTGTTCTTATGAAGAACTTCAAGCAATTGAGGATCAGCTCCAATGGAGTTTACAAAACGTCAGAATGAGAAAGGCTCAGCTTTCTGGGGAGCAACTTGAGCCACTGAAAAATGAGTTTGGGGAAAATGCATGGCAGCAATGGGTTACACACAAAGAAGAAGAACATCAAAGTTCAAGTAAAAACAGCCAAAGCTCATTCGTTGAAACTGATTTACATATTGGACTGCCAGAGAATCGTTTCTGA 636 0.4009 MMLERRRRSFQSFEMGKGKIEIKRIEDTSSRQVTFSKRRNGLMKKAYELSVLCDAQVAVIVFSQKGKLYEFFSSENIIDRYVNHGKNVHTNTFEEERLIQSLNSNCESMARKMELLELSQRKLLEHHGLSYCSYEELQAIEDQLQWSLQNVRMRKAQLSGEQLEPLKNEFGENAWQQWVTHKEEEHQSSSKNSQSSFVETDLHIGLPENRF 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2097 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 15 193 - -
Lele07g2097 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 71 IPR002100 GO:0003677|GO:0046983
Lele07g2097 211 FunFam MADS-box transcription factor MADS-MC 27 97 - -
Lele07g2097 211 Gene3D - 27 113 IPR036879 GO:0003677|GO:0046983
Lele07g2097 211 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Lele07g2097 211 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Lele07g2097 211 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Lele07g2097 211 SUPERFAMILY SRF-like 16 87 IPR036879 GO:0003677|GO:0046983
Lele07g2097 211 Pfam K-box region 99 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele07g2097 211 Coils Coil 99 119 - -
Lele07g2097 211 CDD MADS_MEF2_like 16 84 IPR033896 GO:0000977|GO:0045944
Lele07g2097 211 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Lele07g2097 211 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Lele07g2097 211 ProSiteProfiles K-box domain profile. 99 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2097 Lele-ChrLele07 14349028 14357270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2097 15 167 MADS-box Gene Family AT2G45660 55.769 1.03e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele07g2097 K-box 3.6e-11 No_clan