Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2091 ATGGGAAGAGGAAGAGTGGTTCTGGAGAGAATAGAGAACAAGATCAACAGGCAAGTGACGTTCTCGAAGAGAAGGAACGGATTGCTGAAGAAAGCGTACGAGCTTTCTGTGTTGTGCGATGCTGAAGTCGCTCTTATTATCTTTTCCAGCCGTGGCAAGCTTTTCCAGTACAGCAGCTCTGACCTAAACAGAACCATAGAGCGGTATCGTCAATGTTGTTATATCTCACAAGCTCACGACCTTGTGGAACATGAATCTCAGAACTTGTACCAGGAGCTTTTGAGATTAAAAGTCAAACATGAATCTCTTGAGAGGACACAAAGGCATCTTCTTGGAGAAGATCTTGAGCCACTAAACATGAAGGAATTGCATAATCTCGAGAATCAACTCGACAAAACCCTAACACAAGCGCGACAGCGCAAGACCCAGAAGATGATGGAACGAGCAGATGAGTTACGCAAAAAGGGACACGAACTAGAGGAGGTCAACAAGCAACTCAAGTACAAGCTTCAAGAAATATATGAACGTAGCCAAACCGTAGAAGATGTTGAAGTCCAATCAGTGACAAATCACAGCTCCTTACAAATATGGCATGGGCAGAAGGAAGATAGTTCAAAAGGGAAAGCGATTGAGATGAGGACACAGCAGGGTGGGCAGATCATTCATAACAATAGCATCAACCACAACAATGGATGGCTCATTTGA 705 0.4397 MGRGRVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLFQYSSSDLNRTIERYRQCCYISQAHDLVEHESQNLYQELLRLKVKHESLERTQRHLLGEDLEPLNMKELHNLENQLDKTLTQARQRKTQKMMERADELRKKGHELEEVNKQLKYKLQEIYERSQTVEDVEVQSVTNHSSLQIWHGQKEDSSKGKAIEMRTQQGGQIIHNNSINHNNGWLI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2091 234 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Lele07g2091 234 Coils Coil 120 143 - -
Lele07g2091 234 Coils Coil 86 106 - -
Lele07g2091 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele07g2091 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele07g2091 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 181 - -
Lele07g2091 234 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele07g2091 234 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele07g2091 234 Coils Coil 149 169 - -
Lele07g2091 234 FunFam MADS-box transcription factor 1 13 84 - -
Lele07g2091 234 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Lele07g2091 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele07g2091 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele07g2091 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele07g2091 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele07g2091 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele07g2091 234 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2091 Lele-ChrLele07 14197999 14205255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2091 1 190 MADS-box Gene Family AT2G45650 57.895 1.76e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele07g2091 K-box 1.2e-24 No_clan