Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2045 ATGGTCGTTTGTGGTGGGAAGCCAATGAAGCGGATGAAGAGGAGAGTTACGGCTGATTTCTACGATTTTCTCACGTTTCCGTCCCCTTCAGTCGCTGGAGAAGAGGACTTCTCCGGTGGACCCTTTCGGACGAACGTGAGATCTTTTCTATCGAAGCACGCGCTGCTTCCACCGCCTTCGGCTCTGTTCCCTCACCTGCTGACGTGGCAGATCCTGTTCCGAGTCGGTGACCTGACGGACGGCCCTGAGTCGAGTCCAGCGGTGGTTTGCCTCGACGTTGTCGAAGAAGATGTGGCCAGATCTAGATCCGTCTACTGCGATCAGTGCCGAGTTGTTGGTTGGAGTGGCCATCCTGTATGCGGAAAACGGTACCATTTTATAATCAAGTCTGATGGTACTTCCATTGGTGGGTACCATAAGCCATGTATGTGCTGTGGAGATATCTTGCACCTGTCAGAATCCAAGTGCAAGTCATGCAACCATGTGACAACCACGGATGATGTTGAAGACTGGGTCTATCACCAGTTAGAAAGCACAACTCATCTTTTACATGGTGTAGTCCATGCTAATGGTTATGGTCACCTTCTTCGAGTTAATGGTAGAGAAGGTGGCTCAAAATTTCTTTCTGGGTGCCATATCATGGACTTCTGGGATCGCCTCTGCAAGACACTTGGAGTTAGAAAAGTTAGTGTGATGGATGTGTCGAAGAAGTATGGGTTGGAGTATCGGCTGCTCCATGCTGTTACAAAAGGACATCCTTGGTATGGTGATTGGGGTTACCAATTTGGTTCTGGTAGCTATGGTCTTACAGACGAATCATACAAGTCTGCCGTTGACTTCCTGTCCAATCTGCCATTGTCCACCTTTCTTTCCTCAGGGAAGAAGTGTGATTCTCGTGTACAAGACATGATCTCTTATTACCAGTCTTTGTCAAAGAATGAGCTTGTAAATATAAGGGACTTCTTTTGTTTTTTAATGGGTTTGATTCATGATGCCCGCAAGACTGCTGCATCAAAGAATATTGATGACATCAACTGCAAGAAGCGACGTGTGAATGCTACGGGAGTGTCTTCATCATGGACTAAGAGTGACGTTGAATGTGTGGAGGAGGCCATGCTCAGAGTGCTGCGAGCTGTGTCTGGGTCCAATTGGGTGAGCTGGCGTGCTCTTAGGGGTGCTGTCTGCAAGGTGGCCTCTCCAGAACTGCTTGATTATTGCCTCGGAGAATTGGGAGGAAAAGTGGTCCTTGGTGCCATGGTGAATACCCGATGCAATCCTGTTACTGGTGCTTTTGAGTACAGACTAGAGACAGGGAACAATTCTCTCCATGGAAATGCAAGCAATATTTCTTCAGGCCTCAAGTATCCATCTGAAGTGACTCTTCTACATGACTTGAGATACTTGTATAATTCTCTTCTTCATCCTCAGATGATGTTGAGCTATGATCCAGAGGAGACAAGGGCAATTGCCATGAGCTCTGCTCAGAAACTTATTGACTGCAAGCAGTTTGTAAAGGACTTTAGACCTGAGACGATGCCGCTGACAAACCCGTCTAAGATACGCTTCTCATGTCAAATAGAACTAGAAGATGAATCTGAAGATTTTGTCGCACACCTTCCACCAGAACTAGTTATCCTCCCTGTAAATGCCACCGTATCTGATCTCAAGGTTGAAGCGGCAAACGCTTTTCAAGATGCATATGTCATGTTCAGAAGACTTCAAATCGATGATCTACTTGGCTGTAATCTCGATGATTCCTCCCCGGTCAAGCACTTGTTAGGATCTATGATGGACACAGTCCGGCTGCGAGGAAGATGCACTGGCAAGAATGGGTTAGGCAAATTCCAAATGGAGCGGGGCATCGAGAGGTGGACTGTGGATTGCAGCTGTGGGGCAAAGGACGATGATGGAGAGAGAATGTTGGCTTGTGATATATGTGGAGTGTGGAGACACACTAGGTGTTCTGATATTCATGATGCAGATCCTGTACCTGCACGGTTCGTCTGTCCAAGATGCCAAAACTGTGACTTAAAGCCCAAATCTAATGGGGATGAGATTGTGAATGAGATTATGACCACTAACAAGAACTGCTTGCTGGTGCCATCTGATGTTCGTTGA 2118 0.4703 MVVCGGKPMKRMKRRVTADFYDFLTFPSPSVAGEEDFSGGPFRTNVRSFLSKHALLPPPSALFPHLLTWQILFRVGDLTDGPESSPAVVCLDVVEEDVARSRSVYCDQCRVVGWSGHPVCGKRYHFIIKSDGTSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLESTTHLLHGVVHANGYGHLLRVNGREGGSKFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAVTKGHPWYGDWGYQFGSGSYGLTDESYKSAVDFLSNLPLSTFLSSGKKCDSRVQDMISYYQSLSKNELVNIRDFFCFLMGLIHDARKTAASKNIDDINCKKRRVNATGVSSSWTKSDVECVEEAMLRVLRAVSGSNWVSWRALRGAVCKVASPELLDYCLGELGGKVVLGAMVNTRCNPVTGAFEYRLETGNNSLHGNASNISSGLKYPSEVTLLHDLRYLYNSLLHPQMMLSYDPEETRAIAMSSAQKLIDCKQFVKDFRPETMPLTNPSKIRFSCQIELEDESEDFVAHLPPELVILPVNATVSDLKVEAANAFQDAYVMFRRLQIDDLLGCNLDDSSPVKHLLGSMMDTVRLRGRCTGKNGLGKFQMERGIERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDADPVPARFVCPRCQNCDLKPKSNGDEIVNEIMTTNKNCLLVPSDVR 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2045 705 CDD PHD_MMD1_like 627 672 - -
Lele07g2045 705 SMART PHD_3 627 673 IPR001965 -
Lele07g2045 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 677 IPR013083 -
Lele07g2045 705 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Lele07g2045 705 Pfam PHD-finger 628 675 IPR019787 -
Lele07g2045 705 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 683 - -
Lele07g2045 705 SUPERFAMILY FYVE/PHD zinc finger 618 674 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2045 Lele-ChrLele07 13711556 13716575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2045 85 672 PHD Transcription Factor Family AT5G22260 29.953 1.35e-84 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele07g2045 PHD 1.4e-07 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1998 05 14245782 14250774 Lele07g2045 07 13711556 13716575 hybridization
Lele06g1838 06 12917772 12918683 Lele07g2045 07 13711556 13716575 hybridization