Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2028 ATGGCAACACGTAGATACGCGTTCGGAAGGGTCGATGAAGCAACACATCCGGACTCCATGAGAGCCACCGTTGCTGAGTTTGTCTCCACTTGTATCTTTGTCTTCATCGGAGAAGGCTCCATCCTCGCACTGGACAAGATATACAGGGATTCAGGGACGTCGGCGGCGGAGCTGATGGCAGTAGCGGCAGCACATGCATTTGGTTTGTTTGCGGCCGTAGCGGCGAGCATGCATGTCTCGGGAGGGCATGTCAACCCTGCCGTGACATTCGGAGCTCTTCTCGGCGGAAGGATATCGGTGCTGCGAGCCGTGTACTACTGGGTCGCTCAACTGCTCGGAGCTATCGTCGCCGCTCTCTTGCTCAGGCTTGTCACAAATAACATGAGACCAGCGTCGTTCTCGTTGGCAATAGGGGAGGGTGCGATGCACGCGCTGATATTGGAGATAGTGATGACGTTCGGCCTGATGTACACCGTTTATGGCACCGCCATTGACCCGAAAAGAGGTACTAATGGAGCACTAGCCCCACTGGCAATTGGGCTCATAGTTGGGGCCAACATCCTCGTTGGTGGGCCTTTTGACGGGGCCTGCATGAACCCAGCTCGGGCATTTGGGCCTTCCTTAGTGGGCTGGAGATGGCACTACCACTGGATCTACTGGGTCGGCCCACTCATCGGAGCTGGTCTTGCCGCCCTCGTCTATGAATACATCGTGATCCCCACCGAGCCACCTCATCCTCACCAACCTCTCGCTCCTGAAGATTATTGA 768 0.5612 MATRRYAFGRVDEATHPDSMRATVAEFVSTCIFVFIGEGSILALDKIYRDSGTSAAELMAVAAAHAFGLFAAVAASMHVSGGHVNPAVTFGALLGGRISVLRAVYYWVAQLLGAIVAALLLRLVTNNMRPASFSLAIGEGAMHALILEIVMTFGLMYTVYGTAIDPKRGTNGALAPLAIGLIVGANILVGGPFDGACMNPARAFGPSLVGWRWHYHWIYWVGPLIGAGLAALVYEYIVIPTEPPHPHQPLAPEDY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2028 255 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele07g2028 255 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele07g2028 255 PANTHER AQUAPORIN-8 6 242 IPR034294 -
Lele07g2028 255 TIGRFAM MIP: MIP family channel proteins 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele07g2028 255 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
Lele07g2028 255 FunFam Probable aquaporin TIP1-1 4 251 - -
Lele07g2028 255 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Lele07g2028 255 Gene3D Glycerol uptake facilitator protein. 4 244 IPR023271 -
Lele07g2028 255 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele07g2028 255 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele07g2028 255 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele07g2028 255 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele07g2028 255 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele07g2028 255 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2028 Lele-ChrLele07 13540494 13541835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2028 2 255 Major Intrinsic Protein MIP AT1G73190 69.697 1.21e-122 348