Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g2000 ATGAACCACAAAGCCTCCGTCTCTAAGGAGCTCAATGACAAGTTCACCAAGATCTTAGAGGGCCTTCTTAAGCTGCCTGAAAACAAGGAATGTGCTGACTGCCGAAGCAAGGCACCACGATGGGCAAGTGTGAATCTAGGCATTTTCATATGCATGCAATGTTCGGGAATTCACCGAAGCCTTGGAGTGCATATATCAAAGGTGCGGTCTACAACTTTGGATACATGGTTGCCGGAACAAGTCTCTTTCATGCAATTCATGGGTAATGTGAAGTCAAATGAGTATTGGGAGGCAGAACTGGCGCCAAATTTTGATTTAATTGGCTTTGGACTCGAGAAGTTTATTCGTTGCAAGTATGTGGAGAAAAGGTGGGCTAAAGTTGGTGGAGTAAATCCAGCTTCAAAAGCAGGTGAAATAATCTGTAATATGAATCTGAATGTGCCACCAGCTGCTGGTCCCAAGGGTGGCTTTTCAAGGGCTAATAGGAGACTTTCTCTTGAGGAAAGCATTCTCACAAAACACATGGAACAGATCCTGCCTCCAGTGACCCGACATCGTGGGGGTTCTCTTGACATTCCAAAAAGTACCACCCCTCCGTTTAGGAGGCCGTGCCCATCAGTTGATTTTGATAAGTCCCCAATAAACAATGGCAATGCTGACTTTTTCAGCATGTTTGGTGTCCATGGCGATAAGAAGGACTCTGTAACTGTACCTACTACTAGCTGGACAACATTTGACTGTAAGACAATGATACTTACATCATACGTAATCCTTTATCGCCTATCTTTTATTTTTCTTCGTAGCTCATTTAAAAGAGTTCTTGAAATTTTTTCGATATTTAGTATTTAG 849 0.4287 MNHKASVSKELNDKFTKILEGLLKLPENKECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVSFMQFMGNVKSNEYWEAELAPNFDLIGFGLEKFIRCKYVEKRWAKVGGVNPASKAGEIICNMNLNVPPAAGPKGGFSRANRRLSLEESILTKHMEQILPPVTRHRGGSLDIPKSTTPPFRRPCPSVDFDKSPINNGNADFFSMFGVHGDKKDSVTVPTTSWTTFDCKTMILTSYVILYRLSFIFLRSSFKRVLEIFSIFSI 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g2000 282 SUPERFAMILY ArfGap/RecO-like zinc finger 16 125 IPR037278 -
Lele07g2000 282 SMART arf_gap_3 16 132 IPR001164 GO:0005096
Lele07g2000 282 Gene3D Arf GTPase activating protein 1 128 IPR038508 -
Lele07g2000 282 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Lele07g2000 282 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Lele07g2000 282 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Lele07g2000 282 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Lele07g2000 282 Pfam Putative GTPase activating protein for Arf 17 126 IPR001164 GO:0005096
Lele07g2000 282 FunFam stromal membrane-associated protein 1 isoform X1 1 129 - -
Lele07g2000 282 CDD ArfGap 19 119 - -
Lele07g2000 282 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 187 IPR044520 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g2000 Lele-ChrLele07 13234191 13238364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g2000 19 124 C2H2 Transcription Factor Family AT3G07940 48.214 2.41e-26 102