Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1990 ATGAGGTTCGTGTTAGAAAATGCCGTCCTATCCTTATACACCGGGATAGGGTTGTCATGGTTCGTCCTGAATGCACTAGGATTAGTAAGGAACAGCCATCCTCGTAATCCGAACTTGGAAAGCTTCCCTGGTTCGGTTCCTGAAGCTCAGCCTGCCGGAGAAGAAATGGCAACAACTGTTTCTGCCACAACTCCTGGAACTTCGTTACCGGTTTATTTCCGCAACAATATTCCGAGAATCAGAATTAGTGAGGCTAACATTCGAAGCAACAGAAATTTCCCTTCCTCATCACTCAGAAGTGGCTCCTCCTTCGCCTTCGCGTGTTTACCTCATCCTCCCTCTCAATCACCAACCCCATCTTCCAATACCAGACCCATTTCTTCTCCTTCAACTAAGCTCTACGTCAGTGGACTATCTTTTCGTACCACTGAAGAGAGCTTGCGAAATGCCTTTAAGAAGTTTGGTGAACTTGTGGAAGTCAACCTGGTGATGGATAAAATAGCTAATAGACCAAGAGGATTTGCCTTTCTTCGTTATGCAACTGAAGAGGATTCTCAGAAGGCTATTGACGGAATGCATGGGAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCAAAACCAAGATCAGAGTTGCGCCAAAGGCTTAACCAAAACCCTAGATAG 669 0.4544 MRFVLENAVLSLYTGIGLSWFVLNALGLVRNSHPRNPNLESFPGSVPEAQPAGEEMATTVSATTPGTSLPVYFRNNIPRIRISEANIRSNRNFPSSSLRSGSSFAFACLPHPPSQSPTPSSNTRPISSPSTKLYVSGLSFRTTEESLRNAFKKFGELVEVNLVMDKIANRPRGFAFLRYATEEDSQKAIDGMHGKFLDGRVIFVEVAKPRSELRQRLNQNPR 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1990 222 MobiDBLite consensus disorder prediction 109 128 - -
Lele07g1990 222 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 202 IPR000504 GO:0003723
Lele07g1990 222 SMART rrm1_1 132 205 IPR000504 GO:0003723
Lele07g1990 222 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Lele07g1990 222 SMART rrm2_1 132 205 IPR003954 GO:0003676
Lele07g1990 222 PANTHER NUCLEOLAR PROTEIN 8 108 215 - -
Lele07g1990 222 SUPERFAMILY RNA-binding domain, RBD 109 219 IPR035979 GO:0003676
Lele07g1990 222 Gene3D - 114 222 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1990 Lele-ChrLele07 13122135 13125008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1990 131 220 Eukaryotic Initiation Factors Gene Family AT4G34110 30.851 2.83e-10 57.8