Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1959 ATGGCAACGATCATGTCATCAGTTCCAAACTCCGAGCAGTTTTCCACTGCAGATAATGGGACTAACACCAGTACTACTGCAAACAGACGGAAGAGAAGACCCGCAGGAACACCAGATCCAGATGCGGAGGTGGTGTCGCTGTCGCCGAAGACGCTATTGGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAGGGGTTTCAGAGGGACCAGAACCTGCAGATGCACAGGAGGAGGCATAAGGTTCCCTGGAAGCTGCTAAAGAGGGAGACGCCGGTGGTGAGGAAGAGAGTGTTTGTTTGCCCGGAGCCGACCTGCTTGCACCACGACCCTAGCCACGCTCTCGGCGACCTCGTCGGAATCAAGAAACACTTCCGCCGGAAACACAGCAACCACAAACAATGGGCCTGCCACCGCTGCTCCAAGGCCTACGCCGTTCAGTCCGATTACAAGGCTCATCTCAAGACCTGTGGCACTCGCGGCCATTCCTGTGATTGTGGCCGAGTCTTCTCCAGGGTGGAGAGCTTCATCGAACACCAAGATGCTTGCAATATGGGGCGACTCCTGCCGGAGTCGCAGCCGCAGCAACCGGCATGTCTGTCTCGAACTGCGTCGAGCCCGAGCCCGTCGAGCGAGACCAATTTCAGCGCCGGTCCGGCCTGGCCTCCACCCGGTCTGGTGATACCAAAGCCAACAACGGCGGAACCCACATTCTTCTATAATAACCCTATTGCCGATCAAACCTCGTCCAAGACGTTGAATCAAAACAACAACAAGAAGCTGTACCCGAACTTGGAACTTCAGCTCTCAACCGCCACGCACAACGTCGTCGCAAGAGACGCCACCCATTCGACCCAGTTACAGCTCTCAATTGGGTCGTCGGACATGAGCGACAAAAACGAATCGAATAGGAATTCATCACCAAAGGAGAGTAGTAACAGCAGCGATAAGCCGGCGGCGGCGTTGATGGTGGAGAAAGCGTACGCGGAGGAGGCGAGGAAAGAAGCCAAGAGGCAGATGGAGGCGGCGGAGCAAGAGTTCGCAAAAGCAAGGAGAATAAGACAGCAAGCTCAAGCCGAACTGGATAAAGCATATGCTTTGAAAGAACAAGCGATTCAACAGATCAATTCCACCATGCTTCATATCACATGTCAAGCTTGTAAGCAACAGTTTCAACAGCAAGCTCAAAAATTAATAACGGAAGGGGGCCAAGTATTAGACAACAACAACAATAACAATAACGGGAAAGAAATTAAAACCACTAACTGCTGA 1272 0.5291 MATIMSSVPNSEQFSTADNGTNTSTTANRRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPSHALGDLVGIKKHFRRKHSNHKQWACHRCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLLPESQPQQPACLSRTASSPSPSSETNFSAGPAWPPPGLVIPKPTTAEPTFFYNNPIADQTSSKTLNQNNNKKLYPNLELQLSTATHNVVARDATHSTQLQLSIGSSDMSDKNESNRNSSPKESSNSSDKPAAALMVEKAYAEEARKEAKRQMEAAEQEFAKARRIRQQAQAELDKAYALKEQAIQQINSTMLHITCQACKQQFQQQAQKLITEGGQVLDNNNNNNNGKEIKTTNC 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1959 423 MobiDBLite consensus disorder prediction 283 319 - -
Lele07g1959 423 MobiDBLite consensus disorder prediction 194 217 - -
Lele07g1959 423 SUPERFAMILY beta-beta-alpha zinc fingers 55 81 IPR036236 -
Lele07g1959 423 Coils Coil 319 374 - -
Lele07g1959 423 MobiDBLite consensus disorder prediction 1 44 - -
Lele07g1959 423 Gene3D Classic Zinc Finger 120 197 - -
Lele07g1959 423 MobiDBLite consensus disorder prediction 283 318 - -
Lele07g1959 423 MobiDBLite consensus disorder prediction 194 257 - -
Lele07g1959 423 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 407 IPR031140 -
Lele07g1959 423 MobiDBLite consensus disorder prediction 235 257 - -
Lele07g1959 423 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Lele07g1959 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Lele07g1959 423 Gene3D Classic Zinc Finger 36 98 - -
Lele07g1959 423 MobiDBLite consensus disorder prediction 1 31 - -
Lele07g1959 423 SMART c2h2final6 99 129 IPR013087 -
Lele07g1959 423 SMART c2h2final6 58 80 IPR013087 -
Lele07g1959 423 SMART c2h2final6 135 162 IPR013087 -
Lele07g1959 423 FunFam protein indeterminate-domain 12-like 37 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1959 Lele-ChrLele07 12830277 12833118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1959 18 395 C2H2 Transcription Factor Family AT2G01940 56.965 5.88e-142 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele07g1959 None None None