Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1948 ATGGTTCTAGGATGGCGAAGAAGAAAGAACGGCCGCCGCAACGACAAACTTCATCTCGAACTCGTCGTTCCCAACCATTTCCGGTGCCCGATTTCCCTCGATTTGATGAAAGATCCTGTGACATTGTCCACCGGAATCACCTACGATCGTGAAAACATCGAAAGGTGGTTCCTTGACGGAAATTTCACTTGCCCTGTTACCAATCAGGTTCTTCGGAGCTTCGATCTCATTCCTAATCACACTCTTCGCAGCATGATTCAGGACTGGTGTGTAGAAAATCGACAACATGGGGTCGAGAGAATCCCCACCCCGAGAATTCCCATTTCACCAATCGAAGTTGCAGAGGTTCTTCTTCTTTTGAAATCTTCCGCGAGGCGTTTGGATCAGTACGGTTGTCTCGAACTGGTTCAGAAAATGGAGAAATGGGGTGAAGAGAGCGAGAGGAACAAGAAGTGCATAGTTGAAAATGGAGCTACCGCTGCTCTGGCCTCTGCTTTTGATTCTTTCGCGAATGATTCGATTGAGAAGAATCTGAGTGTTTTGGAAGAGATTTTGTCTGCTTTGAATTGGATGTTCCCACTTCAAATGGAAGCCCAGAAATCGTTGGGCTCACAAGCTTCGTTACGTTGCATGGTGTGGTTTCTGAAACGTCAAGATCTTGGAGGGAAAGACAAGTCCATTGTTGCTCTCAGGGAGCTTTTATCTTTCGGAAGCCAACAACATTTGAATGTTCTGTCAGAAATTGAAGGAGTCAACGAACTATTGGTGGAATTAATCACGAAAAGACTGAGTCCAACCATTACAAAAGCTTCATTAGCTGTAGTTTTCTATTTGGTTTCATCATCTTCATCTTCTTCAAGTGACAAGATGAAACAGAGATTCATCGAACTGGGGTTGGTCTCTTGTTTACTGGAGATTCTCCTGGACTCAGAAAGAAGCCTCTGTGAGAAGTCTTTGGCAATTTTGGATTCACTCTGCTCTTGTAAAGAAGGCAGAGAAAAAGCTTACAGTAACGCGTTGACTATCCCTGTGTTGGTGAAGAAGTTACTGAGAGTTTCAGCCATGGCCACAGATTGCTCTGTTTCTGCAATATGGAAGCTGTGCAAGAATGTTCATGAGAAAGAAGGCGAAGACGAAGAAGAAGAAGAAGGAAGTGTTCTGAAAGAGGCACTGCAAGTTGGTGCGTTTCAGAAGCTATTGGTAGTGTTGCAGATTGGATGTGGGGATGAAACGAAGGTGAAAGCAACAGAGCTTCTTAAGCTTCTGAATCAATATAGGTCAGGCGAAGAGTGTGTAGACTCAGATTTCAAGAACCTCAAGAGATCACATTAA 1332 0.4422 MVLGWRRRKNGRRNDKLHLELVVPNHFRCPISLDLMKDPVTLSTGITYDRENIERWFLDGNFTCPVTNQVLRSFDLIPNHTLRSMIQDWCVENRQHGVERIPTPRIPISPIEVAEVLLLLKSSARRLDQYGCLELVQKMEKWGEESERNKKCIVENGATAALASAFDSFANDSIEKNLSVLEEILSALNWMFPLQMEAQKSLGSQASLRCMVWFLKRQDLGGKDKSIVALRELLSFGSQQHLNVLSEIEGVNELLVELITKRLSPTITKASLAVVFYLVSSSSSSSSDKMKQRFIELGLVSCLLEILLDSERSLCEKSLAILDSLCSCKEGREKAYSNALTIPVLVKKLLRVSAMATDCSVSAIWKLCKNVHEKEGEDEEEEEGSVLKEALQVGAFQKLLVVLQIGCGDETKVKATELLKLLNQYRSGEECVDSDFKNLKRSH 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1948 443 SUPERFAMILY ARM repeat 162 375 IPR016024 -
Lele07g1948 443 ProSiteProfiles U-box domain profile. 22 96 IPR003613 GO:0004842|GO:0016567
Lele07g1948 443 CDD RING-Ubox_PUB 27 69 IPR045210 -
Lele07g1948 443 Pfam U-box domain 23 94 IPR003613 GO:0004842|GO:0016567
Lele07g1948 443 Gene3D - 287 433 IPR011989 -
Lele07g1948 443 SUPERFAMILY RING/U-box 22 99 - -
Lele07g1948 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 101 IPR013083 -
Lele07g1948 443 Gene3D - 143 286 IPR011989 -
Lele07g1948 443 SMART Ubox_2 26 89 IPR003613 GO:0004842|GO:0016567
Lele07g1948 443 PANTHER WDSAM1 PROTEIN 20 433 IPR045185 GO:0061630
Lele07g1948 443 FunFam RING-type E3 ubiquitin transferase 23 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1948 Lele-ChrLele07 12683146 12684477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1948 5 441 U-box Gene Family AT5G37490 43.973 3.22e-118 350