Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1946 ATGATGCTGGGGGCTAAATTTAAAGCCAATGTTAAATGCAAAGCGCCCTTGCATTTCATGGTTCTCTTTGTCTCCACTAACCTCAGAAAGCATCTCTTGGAAAAGGAAATGCTAACAAAGATCATGAGCTCCCATAGACGGAGCAGAAGAGCAGAAGAAGACGACGACGACGAGGAAGAGGAAGAGGAAGAACAAAAATGGCGGTGTTGCTGTCAAAATTGCAGGTGGTACGGAGTGTGGAAGCATTTCATTCTGATATGGGCAGTGTACTCTTCCTTCTTCACTCCCATGGAGTTCGGCTTCTTCAGAGGCTTGCCCGAGGATATCTTCCTCCTCGACATTGCTGGCCAATTTGCTTTCCTCGTCGATATCGTCATCCAATTTTTCCTCTCCTATCGTGACACCTCCTCAAATATCTGGGTCTACGATCACCGTCAAATCGCCAAGAGGTATTTGAAGTCTCGGTTCATTCTTGATTTTCTGAGTTGTCTTCCCTGGGATTATATCTACAAGGCTGCTGGAAGGAAAGAGCCAGTGAGGTATCTTCTATGGATCAGGCTATGGCGAGCATGGAGAGTGATTGAAGTTTTTGAGAAGCTGGAGAAAGATCTCAGGATCAATTACCAATGTACTAGAATTGTGAAACTTCTTGTTGTTGAAATCTATTGCACGCATACGGCTGCCTGCATCTTCTACTATCTTGCCACCACTTTGCCCCCCTCCAAGGAAGGTTATACTTGGATAGGCAGCTTGACGATGGGTGACTACAGCTATTCGGACTTTAGACATATTAGTCTTGGGAGGCGTTATGTGACATCACTCTACTTTGCAATTGTTACCATGGTAACTGTTGGCTTTGGAGAAATTCATGCAGTCAATGTCAGGGAAATGATATTTGTCATGATATATGTTTCCTTTGACATGATTTTGGGTGCTTATCTTCTTGGTAACATTACAGCATTGGTCGTGAAAAGATCAAGAACAGAGAAGTTTAGGGACAAAATGTCTGAACTTAACAAGTACATGAATAAAAATAATTTGGACAAGCAGATAACTAAGGAGATTAGAGGGCACTTGCTGTTACAGTATGACCGCAGTGACACTGAGGCTGCTATTGATGCAGATATTCCAGTTTCTATCCGCACAGAGATTTCGATGAATTTGTATGAGCAGTTCCTTCAGAAAGTTCATCTTTTCAAGGGATGCTCTTCTGGGTTCATTAAACATGTTGCAATCAATGTCCATGAGGAGTTTTTTCTCCCAGGAGAAGTTATTATGGAGCAAGGAGATGTAGTAGATCAACTTTACCTTGTATGCCATGGTGAGCTGGATGAGCTAAGAAAGGAAGATGATGGAAGAGAAGGGCTAGTTAAGCAAAATCAAACCTACAGTTCCTTTGGCGAGGTTTCCTTTCTTTGCAATTTGCCTCAACCTTACATGGTTCGCGCTTGCGAATTTTGCAAAGTTCTGCGTCTAGATAAGCTATCCTTTACAGAAACACTCAAGACATACTTCTTAGATGGTCAGGTTATCTTGCAAAATCTTCTTGAGGGAAAAGACTCTGATCTTCAGTATAAGCTTTTGGAATCAGACTTCACCCTGACAATTGGAAATCGTGAAACAGAACTGGCTATGAGGATTAATTGTGCTGCCTATGAGGGGAATTTCTATCTTTTGAAACATTGGGTTGAATCAGGACTAGATCCCAACAGAACTGATTATGATGGAAGATCACCTTTGCATATTTCTGCATCCAAAGGATATGTAGATATTGCTCGCTTTCTTATTGACAAAGGAGTGAATATTGATTTATCAGATAAGTTTGGGAACACGCCCTTGTTTGAAGCCATAAAGAATGGGCATGAAGAAGTAGCTTCTTTACTTGTAAATAAGGGAGCGACTCTTACTGTTGAAGATGCTGGAAGTTTTCTATGCATGACTGTTGCAACGAAGGAACTGGACCTTTTAAGAAAGCTTTTAGCATATGGTATAAATCCAAATTCTAGAAATTACGATCAACGAACAGCTCTTCACATAGCTGCCTCGGAGTGTTTGTTCGCAGTTGCTGAAATGCTCATAGAAGCAGGAGCAAGTGTTTTATCAACGGACAGGTGGGGATATACCCCACTTGATGATGCTCGCATAGGTGGAAATAGGAACATGATCAGATTGCTTGAAGTAGCAAAAATTCCTCAGCTGGCTGAGATATCAGATGGTATTCAGGAAGCACAAGGTAAGCAGTCTGACACATGCACAGAGATAGCAGAAACACTTCTCTCACCATCGAGAGACGGGAGTCCGAAAAAGAAATGCACCGTATTTCCTTTCCACCCATGGGATCACAAGAAGGATGTAAGAGTAGGAGCTGTGCTGTGGGTTCCTGGAAGCATTGAACGGCTAATAAAGATGGCAAGAGAACAATTGAAATCTCCCAATGGTTCCTGCATTTTATCTCAGCATGGTGGTAAAATTATTGATGTAGACATGATCAGCAATGATGAGCAGCTATTTCTAGTAAGTGATCCACACATTGAGGGCCAAAGAAAGGAAGACAAGTGA 2559 0.4201 MMLGAKFKANVKCKAPLHFMVLFVSTNLRKHLLEKEMLTKIMSSHRRSRRAEEDDDDEEEEEEEQKWRCCCQNCRWYGVWKHFILIWAVYSSFFTPMEFGFFRGLPEDIFLLDIAGQFAFLVDIVIQFFLSYRDTSSNIWVYDHRQIAKRYLKSRFILDFLSCLPWDYIYKAAGRKEPVRYLLWIRLWRAWRVIEVFEKLEKDLRINYQCTRIVKLLVVEIYCTHTAACIFYYLATTLPPSKEGYTWIGSLTMGDYSYSDFRHISLGRRYVTSLYFAIVTMVTVGFGEIHAVNVREMIFVMIYVSFDMILGAYLLGNITALVVKRSRTEKFRDKMSELNKYMNKNNLDKQITKEIRGHLLLQYDRSDTEAAIDADIPVSIRTEISMNLYEQFLQKVHLFKGCSSGFIKHVAINVHEEFFLPGEVIMEQGDVVDQLYLVCHGELDELRKEDDGREGLVKQNQTYSSFGEVSFLCNLPQPYMVRACEFCKVLRLDKLSFTETLKTYFLDGQVILQNLLEGKDSDLQYKLLESDFTLTIGNRETELAMRINCAAYEGNFYLLKHWVESGLDPNRTDYDGRSPLHISASKGYVDIARFLIDKGVNIDLSDKFGNTPLFEAIKNGHEEVASLLVNKGATLTVEDAGSFLCMTVATKELDLLRKLLAYGINPNSRNYDQRTALHIAASECLFAVAEMLIEAGASVLSTDRWGYTPLDDARIGGNRNMIRLLEVAKIPQLAEISDGIQEAQGKQSDTCTEIAETLLSPSRDGSPKKKCTVFPFHPWDHKKDVRVGAVLWVPGSIERLIKMAREQLKSPNGSCILSQHGGKIIDVDMISNDEQLFLVSDPHIEGQRKEDK 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1946 852 CDD CAP_ED 398 504 IPR000595 -
Lele07g1946 852 PRINTS EAG/ELK/ERG potassium channel family signature 314 323 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele07g1946 852 PRINTS EAG/ELK/ERG potassium channel family signature 222 232 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele07g1946 852 PRINTS EAG/ELK/ERG potassium channel family signature 113 123 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele07g1946 852 PRINTS EAG/ELK/ERG potassium channel family signature 481 489 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele07g1946 852 PRINTS EAG/ELK/ERG potassium channel family signature 270 287 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele07g1946 852 PANTHER POTASSIUM CHANNEL AKT1 66 841 IPR045319 GO:0005249|GO:0006813
Lele07g1946 852 SMART ANK_2a 639 668 IPR002110 GO:0005515
Lele07g1946 852 SMART ANK_2a 608 637 IPR002110 GO:0005515
Lele07g1946 852 SMART ANK_2a 672 701 IPR002110 GO:0005515
Lele07g1946 852 SMART ANK_2a 575 604 IPR002110 GO:0005515
Lele07g1946 852 SMART ANK_2a 542 571 IPR002110 GO:0005515
Lele07g1946 852 ProSiteProfiles Ankyrin repeat region circular profile. 608 639 - -
Lele07g1946 852 Gene3D - 544 727 IPR036770 -
Lele07g1946 852 Pfam Ankyrin repeats (many copies) 659 711 IPR002110 GO:0005515
Lele07g1946 852 Pfam Ion transport protein 79 321 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lele07g1946 852 Gene3D Jelly Rolls 387 513 IPR014710 -
Lele07g1946 852 SMART cnmp_10 398 516 IPR000595 -
Lele07g1946 852 SUPERFAMILY Ankyrin repeat 545 725 IPR036770 -
Lele07g1946 852 ProSiteProfiles Ankyrin repeat profile. 575 607 IPR002110 GO:0005515
Lele07g1946 852 Pfam Ankyrin repeats (3 copies) 549 639 IPR002110 GO:0005515
Lele07g1946 852 ProSiteProfiles cAMP/cGMP binding motif profile. 398 501 IPR000595 -
Lele07g1946 852 SUPERFAMILY Voltage-gated potassium channels 75 325 - -
Lele07g1946 852 FunFam Potassium channel SKOR 78 323 - -
Lele07g1946 852 ProSiteProfiles Ankyrin repeat profile. 608 640 IPR002110 GO:0005515
Lele07g1946 852 Gene3D Helix hairpin bin 326 386 - -
Lele07g1946 852 Pfam KHA, dimerisation domain of potassium ion channel 769 838 IPR021789 -
Lele07g1946 852 SUPERFAMILY cAMP-binding domain-like 326 516 IPR018490 -
Lele07g1946 852 ProSiteProfiles Ankyrin repeat profile. 672 704 IPR002110 GO:0005515
Lele07g1946 852 ProSiteProfiles Ankyrin repeat region circular profile. 672 704 - -
Lele07g1946 852 FunFam Potassium channel KAT2 386 522 - -
Lele07g1946 852 Pfam Cyclic nucleotide-binding domain 418 504 IPR000595 -
Lele07g1946 852 Gene3D - 79 324 - -
Lele07g1946 852 ProSiteProfiles KHA domain profile. 770 852 IPR021789 -
Lele07g1946 852 ProSiteProfiles Ankyrin repeat region circular profile. 575 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1946 Lele-ChrLele07 12665981 12672770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1946 75 704 Ion Channels AT5G37500 59.049 0.0 813