Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1899 ATGGACCCTTCCTCAATCCCTCCTCCGTCCTCCTTTCCGGCTCCAATCTCTCTCTTCCCCGTCAACTATGGTGCTGTAGCTGCTTCCAACACTACGACCACCGCAACCGCAGCCTCCGTCGCTCCCGTCGCGAATTCGGCTCCGGCTGCTGCTCCTTCTGATGCAGTTTCCACCCAGCCTGCTGCTCCCACTGCGAACTACCCTCCTTATTCTGAGATGATTTATGCAGCAATTGAGGCGCTGAAGGAGAAAAATGGGTCTAGCAAGAGGGCTATTGCGAAATACATAGAGAACGCTTATCCTAACCTTCCACCGACTCACCCTTCTTTGTTGACCTACCACCTTCAGCGCTTAAAGAATAATGGACTCCTTGTTATGGTCAAAAACTCTTATAAACTTCCTAGATCTGACGGTTCTCCGTCTACTGCGCAGAGAGGACGTGGCAGACCACCGAAGCTCAAGCCTCAGCCGCAGACCCAACCTCTGGCTCATACTCAGGGCCAGCCCCAGGTTCAGGCTTCGGGTCAGCCAGAGCAGCAGCCGGAGTCCATGCCCAACGCGGCGCAAAATCTGCAAAATGCTGAGCCTGTTTGGGTTGCCCTAGGGCTCGCTGATGAGCCCACAGAAGTGAAGAAACGAGGCCCAGGCCGTCCTCGCAAGAGTGCCGTAGTAGCAGAGGGGGTTGCTGTACCTGCAACGGCTGCTCGGAGAGGTCGTCCACCGGGAACCGGGAGATCCAGGTTGGCAAAGAGGCCTGGGCGTGCTCCGAAGCCGAAATCTGTGTTGGCAATCTCTAATGGGATGAAGCGTCGACCTGGTAGGCCGCCAAAAATCCAATCTAAACCCACGGTGATTCCTTTTGCCACTCCGGCCTCTGCTTCCCAAGGGCCGCCTACTGCACTCGCCATTCAGGAAGGAACTGTAACAGATGCTACTGCACCAATTCTCACTCCTAGGCGTAGAGGGCGTCCGAAGAAGTATGGAGTGCAAGCTCCTGGAGTTGCTTCTCAAACTATTGGCCGTGGTCGAGGCCGTGGACGAGGACGTGGGCGCGGTGCCTATCGTAGCTCTACTGGAAGATCCGCTGGCCGGCCTAGGAAGGGAACAACTCCTGATGCGGCTTCACCAAAAGCTGCTAATGAAGAGTTCAAGAGGAAACTTGAATATTTTCAATCCAAAGTGAAGGAATCTCTTGCTGTGATTAAGCCTCATTTCAACCATGAAAGCCCTGTCGCTGCAATTGCGGCAATCCAAGATTTAGAAATTCTGGCAACCCTGGACCTTAATGCACCCTTAAATGATGATACACAGCCAGCACAGCAACTTCCTCCTGTTCAAGGGCAGCAACAGCCGGCACTGCAGCAGCAATCGGAACAGCCGGAGTATCAACAGCAGCAGCAAATGCCACAGCTTCAGATGTATCGACATCAGTTGCCACAGTCTCATGTTTTTCCTCAGGCATATCAGCAGCCACAGATTTTCCAACAGCAACTGCCGCAGCCTCAGCTTTATCAACAGCAAATGCAGCATGTACCGATGCAGTCACAGCAGCCACAATTGTTTCAGCCACATGCATGA 1578 0.5361 MDPSSIPPPSSFPAPISLFPVNYGAVAASNTTTTATAASVAPVANSAPAAAPSDAVSTQPAAPTANYPPYSEMIYAAIEALKEKNGSSKRAIAKYIENAYPNLPPTHPSLLTYHLQRLKNNGLLVMVKNSYKLPRSDGSPSTAQRGRGRPPKLKPQPQTQPLAHTQGQPQVQASGQPEQQPESMPNAAQNLQNAEPVWVALGLADEPTEVKKRGPGRPRKSAVVAEGVAVPATAARRGRPPGTGRSRLAKRPGRAPKPKSVLAISNGMKRRPGRPPKIQSKPTVIPFATPASASQGPPTALAIQEGTVTDATAPILTPRRRGRPKKYGVQAPGVASQTIGRGRGRGRGRGRGAYRSSTGRSAGRPRKGTTPDAASPKAANEEFKRKLEYFQSKVKESLAVIKPHFNHESPVAAIAAIQDLEILATLDLNAPLNDDTQPAQQLPPVQGQQQPALQQQSEQPEYQQQQQMPQLQMYRHQLPQSHVFPQAYQQPQIFQQQLPQPQLYQQQMQHVPMQSQQPQLFQPHA 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1899 525 PRINTS Histone H5 signature 53 74 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele07g1899 525 PRINTS Histone H5 signature 208 227 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele07g1899 525 PRINTS Histone H5 signature 80 97 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele07g1899 525 PANTHER HISTONE H1 46 279 - -
Lele07g1899 525 MobiDBLite consensus disorder prediction 158 187 - -
Lele07g1899 525 Coils Coil 78 98 - -
Lele07g1899 525 CDD H15 64 143 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele07g1899 525 FunFam Histone H1.2 63 143 - -
Lele07g1899 525 SMART h15plus2 64 130 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele07g1899 525 MobiDBLite consensus disorder prediction 208 380 - -
Lele07g1899 525 MobiDBLite consensus disorder prediction 131 187 - -
Lele07g1899 525 Pfam linker histone H1 and H5 family 68 132 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele07g1899 525 MobiDBLite consensus disorder prediction 434 469 - -
Lele07g1899 525 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 66 135 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele07g1899 525 MobiDBLite consensus disorder prediction 504 525 - -
Lele07g1899 525 PRINTS AT-hook-like domain signature 357 367 IPR017956 GO:0003677
Lele07g1899 525 PRINTS AT-hook-like domain signature 316 327 IPR017956 GO:0003677
Lele07g1899 525 PRINTS AT-hook-like domain signature 144 154 IPR017956 GO:0003677
Lele07g1899 525 SUPERFAMILY "Winged helix" DNA-binding domain 64 140 IPR036390 -
Lele07g1899 525 SMART AT_hook_2 212 224 IPR017956 GO:0003677
Lele07g1899 525 SMART AT_hook_2 359 371 IPR017956 GO:0003677
Lele07g1899 525 SMART AT_hook_2 318 330 IPR017956 GO:0003677
Lele07g1899 525 SMART AT_hook_2 234 246 IPR017956 GO:0003677
Lele07g1899 525 SMART AT_hook_2 269 281 IPR017956 GO:0003677
Lele07g1899 525 SMART AT_hook_2 144 156 IPR017956 GO:0003677
Lele07g1899 525 MobiDBLite consensus disorder prediction 285 306 - -
Lele07g1899 525 Gene3D - 63 144 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1899 Lele-ChrLele07 12272996 12276682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1899 73 148 Single Myb Histone (SMH) Gene Family AT1G49950 39.474 6.84e-07 49.3