Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1828 ATGAAAGCGGCAAATGCATTGGGAGCTAAGACTGCGAGAGCTTGTGATAGTTGTCTTCGCCGACGAGCTCGGTGGTTTTGCTCCGCCGATGATGCTTTCTTATGCCATGGCTGTGACAATCTGGTTCACTCTGCGAATCAGTTAGCCAGTAGACATGAAAGGGTTCGTCTTCAAACTGCTTCATCCTCCAAAAAGGGTAACTCGTCCACATCTCAAGTATGGTACAGTGGATTCACACGCAAGGCAAGAACCCCGCGTCGTAATAATAGCAAGCAGTTATCATTATTGGCTCAGCAAAAATCCAAACATGAGGAAGAAGAGGAATCGATTTTTAATAGTACTCTTCCCGTCGTGCCGGAGCTCGGAAGCGAAGAAGGTGGTGGGCTGGACGAGAGCGACGAGCGGTTGCTTTGCCGGGTTCCGGAGTTTGATCCGTTCGAAGATGAGCTTTGCAATATTTACAGTGAGGTTGGGGATGATCAGAGTTTGGACGTTGTGATGAAGAAAGATGATGATGTGAATACTGGTGGCGGCGATGATGAAGGAACGTGTTGTGAATTAGACAATTTTTCGGAGTTTCTTGTGTCGGATATGGATCTTGCAGAGTTTGCTGCTGATGTTGAAAGCTTACTGGAAAGTGGGCTTGATGAATCTGCAGGAGCATCAGAACTACTGTTGGATTGTAAACAAGAAGAAATGATGGAAGCATTGGAAGGTACTATCGTGGGGTCGATGACAGACAAAAATAATAATGCGATGGTAAAGATTAAGGATGAAGAACAAGTAATTGAAGCTAACATGGTTGTAGGCATGACAAGTGAGACCTTAAATTGGAACACAACAACACAGACAATTCATCAGGCCGGATCATCATTATCAGAAGAGGAAAACAAGGTGGATACGAAGAAGTCAAAGATATTTTTGAGGTTAAACTACGAGGATGTCATAAGTGCTTGGGCAAGTCAAGGTTGTCCCTGGACAACAGGAAACCCACCTCAGTTCAACTCTAATGACTGCTGGCCACACTGCTTGGGTTCGAGTGGAGGAGATGTTCATCAGTGCTGTTATGGTGGGGAAGTAGGGGGCTTAAGGGGGCATGGAGATGGGGGAAGAGAAGCGAGAGTGTCGAGGTACAGAGAGAAGAGAAGAACACGTTTATTTGCGAAGAAGATAAGGTACGAGGTGAGGAAACTGAACGCAGAAAAAAGACCTAGAATGAAAGGTCGATTTGTGAAGAGGACTTCCTTCGTTGGAACCACTGCTACTGCTTTGCCTGCTTCTTCTCACTGA 1290 0.4574 MKAANALGAKTARACDSCLRRRARWFCSADDAFLCHGCDNLVHSANQLASRHERVRLQTASSSKKGNSSTSQVWYSGFTRKARTPRRNNSKQLSLLAQQKSKHEEEEESIFNSTLPVVPELGSEEGGGLDESDERLLCRVPEFDPFEDELCNIYSEVGDDQSLDVVMKKDDDVNTGGGDDEGTCCELDNFSEFLVSDMDLAEFAADVESLLESGLDESAGASELLLDCKQEEMMEALEGTIVGSMTDKNNNAMVKIKDEEQVIEANMVVGMTSETLNWNTTTQTIHQAGSSLSEEENKVDTKKSKIFLRLNYEDVISAWASQGCPWTTGNPPQFNSNDCWPHCLGSSGGDVHQCCYGGEVGGLRGHGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSFVGTTATALPASSH 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1828 429 Pfam CCT motif 371 413 IPR010402 GO:0005515
Lele07g1828 429 Pfam B-box zinc finger 12 55 IPR000315 GO:0008270
Lele07g1828 429 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 3 415 - -
Lele07g1828 429 SMART bboxneu5 10 57 IPR000315 GO:0008270
Lele07g1828 429 MobiDBLite consensus disorder prediction 81 112 - -
Lele07g1828 429 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Lele07g1828 429 CDD Bbox1_BBX-like 14 57 - -
Lele07g1828 429 ProSiteProfiles CCT domain profile. 371 413 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1828 Lele-ChrLele07 11621844 11624019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1828 4 413 C2C2-CO-like Transcription Factor Family AT1G25440 43.023 1.90e-93 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele07g1828 zf-B_box 4.7e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1828 07 11621844 11624019 Lele07g1828 07 11621844 11624019 ECH
Lele05g1763 05 11670889 11672558 Lele07g1828 07 11621844 11624019 hybridization
Lele06g1620 06 10848903 10850587 Lele07g1828 07 11621844 11624019 hybridization